Browse Element(s) Details


Os.16992.1.S1_at

Description gb:AK121967.1
DB_XREF= gi:37991590
TID=Os.16992.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108F18, full insert sequence.
FL= gb:AK121967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2030010/11Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20260NANA3+11428263..11429438Eukaryotic aspartyl protease family protein
LOC_Os03g20270Os.54672.1.S1_at1/113+11438721..11439880Eukaryotic aspartyl protease family protein
LOC_Os03g20280OsAffx.26607.2.S1_at10/113+11440549..11442303hypothetical protein
LOC_Os03g20280OsAffx.22759.2.S1_at1/113+11440549..11442303hypothetical protein
LOC_Os03g20290Os.54672.1.S1_at10/113+11446469..11447983Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20300Os.16992.1.S1_at10/113+11447889..11454565Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
LOC_Os03g20310Os.15238.1.S1_at11/113+11454734..11460085Transcription factor HBP-1b, putative, expressed
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006006biological_processglucose metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004345molecular_functionglucose-6-phosphate 1-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16992.1.S1_at--309--5191Chr03:11448695..11448719 (25 bp)
GCAATGTACAGTCCCTCTTCTATTA
LOC_Os03g20300
Os.16992.1.S1_at--765--4291Chr03:11448617..11448641 (25 bp)
CCTTTCCTACGTTGTCACTGTTGAA
LOC_Os03g20300
Os.16992.1.S1_at--127--7871Chr03:11448592..11448616 (25 bp)
GGTATAAGTGTCTTTTCCCATTATT
LOC_Os03g20300
Os.16992.1.S1_at--1021--7871Chr03:11448563..11448587 (25 bp)
GGTTTTGTTCCATTGTACTCGATAT
LOC_Os03g20300
Os.16992.1.S1_at--1045--2231Chr03:11448526..11448550 (25 bp)
AAATTGTTTCCCCAGATTGCACCAC
LOC_Os03g20300
Os.16992.1.S1_at--1046--8331Chr03:11448493..11448512 (20 bp)
GGCGGAGAAATGCATGTAACCCCTA
LOC_Os03g20300
Os.16992.1.S1_at--374--651NONE
ATGTAACCCCTAAGGTGGCCAGGTG
NONE
Os.16992.1.S1_at--988--8771Chr03:11448166..11448190 (25 bp)
TGTTTAGTGCGCTTAATCCATCGTC
LOC_Os03g20300
Os.16992.1.S1_at--142--3531Chr03:11448148..11448172 (25 bp)
CATCGTCCGTACTTTACTTATGCTT
LOC_Os03g20300
Os.16992.1.S1_at--806--631Chr03:11448129..11448153 (25 bp)
ATGCTTACCCTATATCTTGATTCTT
LOC_Os03g20300
Os.16992.1.S1_at--402--2571Chr03:11448020..11448044 (25 bp)
AACGGCCAGTTGCATCACCAGAGAG
LOC_Os03g20300
Target Sequence 
GCAATGTACAGTCCCTCTTCTATTACCAAACCTGATTGACAAATTTCATCAAGAAATGCAACAAAAATAGAAATGGTTCC
TTTCCTACGTTGTCACTGTTGAAGGTATAAGTGTCTTTTCCCATTATTATATGGTTTTGTTCCATTGTACTCGATATTGC
AGATTGTTAAAATTGTTTCCCCAGATTGCACCACCCGGGGCAGCGGAGGCGGAGAAATGCATGTAACCCCTAAGGTGGCC
AGGTGGGGATATGGGCACGGAAATTTGGCTTAAGGGTCTAAAATGCTGCATATTGTTTAGTGCGCTTAATCCATCGTCCG
TACTTTACTTATGCTTACCCTATATCTTGATTCTTGATCTTCCATTCTTATGTGAGATCTTGATAATAAATTTGCAGTTT
ACATGGCAAGGAATTTGACCCAGCAAGCAACAGAGATTGAACGGCCAGTTGCATCACCAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis