Browse Element(s) Details


Os.17019.1.A1_at

Description gb:CR288909
DB_XREF= gi:44675475
DB_XREF=CR288909
CLONE=p425a04p3
TID=Os.17019.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.17019 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565656.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2192011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21960NANA2+13056046..13057224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21970Os.11446.1.S1_at10/112+13059121..1306384826S protease regulatory subunit 6B homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17019.1.A1_at--521--4231Chr02:13039709..13039733 (25 bp)
CCGACTCCAGATCGGTTCAATCCGA
LOC_Os02g21920
Os.17019.1.A1_at--48--5731Chr02:13039711..13039735 (25 bp)
GACTCCAGATCGGTTCAATCCGAGC
LOC_Os02g21920
Os.17019.1.A1_at--844--9191Chr02:13039714..13039738 (25 bp)
TCCAGATCGGTTCAATCCGAGCAGT
LOC_Os02g21920
Os.17019.1.A1_at--228--3431Chr02:13039716..13039740 (25 bp)
CAGATCGGTTCAATCCGAGCAGTTT
LOC_Os02g21920
Os.17019.1.A1_at--173--6411Chr02:13039718..13039742 (25 bp)
GATCGGTTCAATCCGAGCAGTTTAT
LOC_Os02g21920
Os.17019.1.A1_at--63--3951Chr02:13039721..13039745 (25 bp)
CGGTTCAATCCGAGCAGTTTATTAG
LOC_Os02g21920
Os.17019.1.A1_at--1079--7871Chr02:13039722..13039746 (25 bp)
GGTTCAATCCGAGCAGTTTATTAGT
LOC_Os02g21920
Os.17019.1.A1_at--894--6751Chr02:13039723..13039747 (25 bp)
GTTCAATCCGAGCAGTTTATTAGTT
LOC_Os02g21920
Os.17019.1.A1_at--712--9691Chr02:13039725..13039749 (25 bp)
TCAATCCGAGCAGTTTATTAGTTTG
LOC_Os02g21920
Os.17019.1.A1_at--595--551Chr02:13039728..13039752 (25 bp)
ATCCGAGCAGTTTATTAGTTTGTTC
LOC_Os02g21920
Os.17019.1.A1_at--534--4071Chr02:13039731..13039755 (25 bp)
CGAGCAGTTTATTAGTTTGTTCTGT
LOC_Os02g21920
Target Sequence 
CCGACTCCAGATCGGTTCAATCCGAGCAGTTTATTAGTTTGTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17019.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis