Browse Element(s) Details


Os.17102.1.S1_at

Description gb:AK072566.1
DB_XREF= gi:32982589
TID=Os.17102.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134O09, full insert sequence.
FL= gb:AK072566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6613010/11arm repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66100Os.19823.1.S1_at11/111+38709242..38712353Gibberellin 20 oxidase 2, putative, expressed
LOC_Os01g66110Os.5194.2.S1_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66110Os.5194.1.S1_x_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66120Os.12199.1.S1_at10/111+38725728..38728330NAC-domain containing protein 2, putative, expressed
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17102.1.S1_at--319--2651Chr01:38739257..38739281 (25 bp)
AACCACCTGGTGGAGCTGATGGATC
LOC_Os01g66130
Os.17102.1.S1_at--1093--8231Chr01:38739319..38739343 (25 bp)
GGCAAACCTTGCGACTGTGCATGAT
LOC_Os01g66130
Os.17102.1.S1_at--352--10731Chr01:38739357..38739381 (25 bp)
TTGCTCAGGCAGGAGGCATCCGAGT
LOC_Os01g66130
Os.17102.1.S1_at--755--10511Chr01:38739415..38739439 (25 bp)
TTCAAAGGAGAATGCCGCTGCTGCC
LOC_Os01g66130
Os.17102.1.S1_at--355--9811Chr01:38739463..38739487 (25 bp)
TAACAGGTTTTGCACCCTGGTTCTT
LOC_Os01g66130
Os.17102.1.S1_at--714--4411Chr01:38739502..38739526 (25 bp)
GCCACCTTTGGTTGCATTGTCGCAA
LOC_Os01g66130
Os.17102.1.S1_at--1015--5291NONE
GAAGGCTCAGGTTCTTCTAAGCTAT
NONE
Os.17102.1.S1_at--1127--9511Chr01:38739651..38739675 (25 bp)
TCTAAGCTATTTTCGCAACCAGCGC
LOC_Os01g66130
Os.17102.1.S1_at--74--9091Chr01:38739721..38739745 (25 bp)
TGCGGCGGTCTGATTATTGTTCCAT
LOC_Os01g66130
Os.17102.1.S1_at--206--6891Chr01:38739775..38739799 (25 bp)
GTATATTCCATCCTAGTCGTAGCAT
LOC_Os01g66130
Os.17102.1.S1_at--801--8871Chr01:38739828..38739852 (25 bp)
TGATGTCACAAGTTGCTTCCTGTAA
LOC_Os01g66130
Target Sequence 
AACCACCTGGTGGAGCTGATGGATCCAGCTGCTGGGATGGTTGATAAAGCTGTTGCTGTTCTGGCAAACCTTGCGACTGT
GCATGATGGAAGGAATGCCATTGCTCAGGCAGGAGGCATCCGAGTACTGGTTGAGGTTGTTGAGCTGGGTTCTGCACGTT
CAAAGGAGAATGCCGCTGCTGCCCTGCTACAACTCTGCACAAACAGTAACAGGTTTTGCACCCTGGTTCTTCAAGAAGGC
GTCGTGCCACCTTTGGTTGCATTGTCGCAATCAGGCACAGCCCGTGCAAGAGAGAAGGCTCAGGTTCTTCTAAGCTATTT
TCGCAACCAGCGCCACGTCAGGGTTGGGAGAGGGTAAGTCTACGCAATTAAGCAGCAATGCGGCGGTCTGATTATTGTTC
CATGANNNCNTTGNNNNNGNNATTAAGAGATGTATATTCCATCCTAGTCGTAGCATATTTTTTCTGGTAGTGATTCCNAA
TGATTGATGTCACAAGTTGCTTCCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis