Browse Element(s) Details


Os.17242.1.S1_at

Description gb:AK066553.1
DB_XREF= gi:32976571
TID=Os.17242.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072J16, full insert sequence.
FL= gb:AK066553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1423011/11hemolysin A family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14230Os.17242.1.S1_at11/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14230Os.51919.1.S1_at1/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14240Os.57063.1.S1_at11/1111+7966149..7968131expressed protein
LOC_Os11g14250NANA11+7974089..7974517hypothetical protein
LOC_Os11g14260NANA11+7980481..7983082receptor-interacting serine-threonine kinase 4, putative
LOC_Os11g14270Os.14754.1.A1_s_at1/1111+7985564..7989894hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17242.1.S1_at--510--9591Chr11:7960917..7960937 (21 bp)
TCTTGGTTATGCCTGCTGTAGTCAA
LOC_Os11g14230
Os.17242.1.S1_at--42--5651Chr11:7960883..7960907 (25 bp)
GACAGACTCGACATTGATTACACTT
LOC_Os11g14230
Os.17242.1.S1_at--142--3291Chr11:7960856..7960880 (25 bp)
CAAACCTCAATTTGAAGCTCGTCGA
LOC_Os11g14230
Os.17242.1.S1_at--261--9631Chr11:7960320..7960344 (25 bp)
TCAGGCGTAGAGCAGTTTGGATTCT
LOC_Os11g14230
Os.17242.1.S1_at--211--9591Chr11:7960240..7960264 (25 bp)
TCTTGCTTGCTTCCATAGGATCCCA
LOC_Os11g14230
Os.17242.1.S1_at--673--4911Chr11:7960232..7960256 (25 bp)
GCTTCCATAGGATCCCAGTGCAAGA
LOC_Os11g14230
Os.17242.1.S1_at--265--3451Chr11:7960181..7960205 (25 bp)
CATGATTATTTGTACCTAATGCCAT
LOC_Os11g14230
Os.17242.1.S1_at--776--2031Chr11:7960127..7960151 (25 bp)
ACTTTCTGATCTTTTTACCAAGGAT
LOC_Os11g14230
Os.17242.1.S1_at--385--10271Chr11:7960064..7960088 (25 bp)
TTTGCAATGCTTTCCTAATTCCTAT
LOC_Os11g14230
Os.17242.1.S1_at--315--4891Chr11:7960056..7960080 (25 bp)
GCTTTCCTAATTCCTATATCTGTAA
LOC_Os11g14230
Os.17242.1.S1_at--563--8031Chr11:7959970..7959994 (25 bp)
GGAGTACACTACAGGTATTTTTGTT
LOC_Os11g14230
Target Sequence 
TCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCT
CGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGG
CGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTG
CTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATA
TCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATG
TGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCANAGCTTTTTGTGCACTTCC
AACTAACTCGGATATTTATTTACGTAGGAGTACACTACAGGTATTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis