Browse Element(s) Details


Os.17247.1.S1_at

Description gb:AK101538.1
DB_XREF= gi:32986747
TID=Os.17247.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048F22, full insert sequence.
FL= gb:AK101538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5597011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17247.1.S1_at--473--71Chr02:34254123..34254147 (25 bp)
ATTGCTCCGCCCTTAAACGTGCAGA
LOC_Os02g55970
Os.17247.1.S1_at--388--4311Chr02:34254133..34254157 (25 bp)
CCTTAAACGTGCAGATGGCCGCCAT
LOC_Os02g55970
Os.17247.1.S1_at--995--1451Chr02:34254265..34254289 (25 bp)
AGCAAGGCTCTTCTTCCAATCCGTT
LOC_Os02g55970
Os.17247.1.S1_at--971--3151Chr02:34254281..34254305 (25 bp)
CAATCCGTTTGCTAGTCCATACATG
LOC_Os02g55970
Os.17247.1.S1_at--752--331Chr02:34254299..34254323 (25 bp)
ATACATGTCTGCAGGAGTTCACCCG
LOC_Os02g55970
Os.17247.1.S1_at--37--7651Chr02:34254333..34254357 (25 bp)
GGGATGCAGCTCCATGCCGGCAATT
LOC_Os02g55970
Os.17247.1.S1_at--860--591Chr02:34254346..34254370 (25 bp)
ATGCCGGCAATTCGTACACATACTC
LOC_Os02g55970
Os.17247.1.S1_at--940--9391Chr02:34254357..34254381 (25 bp)
TCGTACACATACTCTGGGACAGGCA
LOC_Os02g55970
Os.17247.1.S1_at--969--10031Chr02:34254387..34254411 (25 bp)
TAGAGTGACACACCATCTGCTGCTT
LOC_Os02g55970
Os.17247.1.S1_at--718--6131Chr02:34254563..34254587 (25 bp)
GAGGGCACTGGAGTTCTCTAAAAAA
LOC_Os02g55970
Os.17247.1.S1_at--661--3731Chr02:34254623..34254647 (25 bp)
CTAATGTAACAACTGCTGCTATTTC
LOC_Os02g55970
Target Sequence 
ATTGCTCCGCCCTTAAACGTGCAGATGGCCGCCATGGCGCAGCAGCAGCAGCATATGTTCATGCTCCAGCAGCAGCAACA
ACAGTATGATCAGCAGCAGCAGCAGATGATGATGATGATGGGAAGGCAACCGTATGATCANGCAGCAAGGCTCTTCTTCC
AATCCGTTTGCTAGTCCATACATGTCTGCAGGAGTTCACCCGTACGGTCCGGGGATGCAGCTCCATGCCGGCAATTCGTA
CACATACTCTGGGACAGGCATGATGTAGAGTGACACACCATCTGCTGCTTGTTTGGCANTTTTTTTTTNTTCATTTTATC
GCATTTTTTTGGGCGGTTTATCAAATGTGATTTTAGGAGGATTAGATCGGTAGATGGGACCTGGTATAGAGTCAAGATGA
GCANTTGCCGTCGAAGTTTTTTCCCNGCTCTTTGCTGACANAAGAGGGCACTGGAGTTCTCTAAAAAAAGAAAGCAGTTG
TGAAGGGTTGTATACNTTGAAATCTAATGTAACAACTGCTGCTATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis