Browse Element(s) Details


Os.17268.1.S1_at

Description gb:AK104878.1
DB_XREF= gi:32990087
TID=Os.17268.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E12, full insert sequence.
FL= gb:AK104878.1 gb:AK066022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3347010/11Peroxisomal membrane carrier protein, putative, expressed
LOC_Os02g1317010/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed
LOC_Os09g33460Os.49632.1.S1_a_at11/119+19710358..19712402Double-stranded RNA binding motif family protein, expressed
LOC_Os09g33464NANA9+19723592..19723891hypothetical protein
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015884biological_processfolic acid transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005778cellular_componentperoxisomal membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17268.1.S1_at--818--3131Chr02:7021690..7022151 (25 bp)
CAATTCAAGCGGTCCGGGAGGTCTA
LOC_Os02g13170
Os.17268.1.S1_at--195--8032Chr02:7022143..7022167 (25 bp)
GGAGGTCTACCGTGAATCAGGCATA
LOC_Os02g13170
Os.17268.1.S1_at--509--8492Chr02:7022332..7022356 (25 bp)
TGGCAAAGCGTCTCCGGTCAAAGAG
LOC_Os02g13170
Os.17268.1.S1_at--901--2692Chr02:7023052..7023076 (25 bp)
AAGCTCGGAGCTACTGTTGTGACAT
LOC_Os02g13170
Os.17268.1.S1_at--323--7372Chr02:7023070..7023094 (25 bp)
GTGACATACCCATTGCTAGTGGTTA
LOC_Os02g13170
Os.17268.1.S1_at--537--7391Chr09:19728506..19728527 (22 bp)
GTGATGTCCAGATACACAGGTACGA
LOC_Os09g33470
Os.17268.1.S1_at--429--3312Chr02:7023928..7023950 (23 bp)
CACAGGTACGATTGACGCGATCATA
LOC_Os02g13170
Os.17268.1.S1_at--428--3972Chr02:7023960..7023984 (25 bp)
CGGTATGAAGGATTGCACGGGTTTT
LOC_Os02g13170
Os.17268.1.S1_at--486--1252Chr02:7024003..7024027 (25 bp)
AGATTGTACAGAGCGTCTTTGCCGC
LOC_Os02g13170
Os.17268.1.S1_at--300--4532Chr02:7024023..7024047 (25 bp)
GCCGCCTCAGTTCTTTTTATGGTAA
LOC_Os02g13170
Os.17268.1.S1_at--469--8692Chr02:7024098..7024121 (24 bp)
TGTGCTCGGTCCTAGCTCTAAGAAA
LOC_Os02g13170
Target Sequence 
CAATTCAAGCGGTCCGGGAGGTCTACCGTGAATCAGGCATAAGAGGATTCTGGAAAGGACTTATTCCAACACTAATTATG
GTATGTAATCCATCAATTCAATTTATGATCTATGAAACATTGGCAAAGCGTCTCCGGTCAAAGAGATCTGGAAAGGAACT
CCCAAAAAAGAACCTTACTGCTATGGAGGTATTCTTATTAGGTGCAATAGCAAAGCTCGGAGCTACTGTTGTGACATACC
CATTGCTAGTGGTTAAGTCTAGGTTGCAAGCAAAACAAGAAATTGGCAGGAATGTGATGTCCAGATACACAGGTACGATT
GACGCGATCATAAAGATGATCCGGTATGAAGGATTGCACGGGTTTTACAAAGGAATGGGTACGAAGATTGTACAGAGCGT
CTTTGCCGCCTCAGTTCTTTTTATGGTAAAAGAAGAGTTGGTAAAATTCGTAGTTATGTTAATTGCTAGGAGTAGGACTG
TGCTCGGTCCTAGCTCTAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis