Browse Element(s) Details


Os.17285.2.S1_x_at

Description gb:AK109197.1
DB_XREF= gi:32994406
TID=Os.17285.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B10, full insert sequence.
FL= gb:AK109197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1539010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_x_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16419OsAffx.8598.1.S1_at1/1110+7855526..7857188NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17285.2.S1_x_at--674--8391Chr10:7833985..7834009 (25 bp)
GGCGCCAAAAGGAAGCTGAACTGAA
LOC_Os10g15390
Os.17285.2.S1_x_at--352--10471Chr10:7834011..7834035 (25 bp)
TTACTTGAAGAGGAGCTCGCTCGAA
LOC_Os10g15390
Os.17285.2.S1_x_at--204--8091Chr10:7834067..7834091 (25 bp)
GGACCGTTTGAACTCCGAGGACATC
LOC_Os10g15390
Os.17285.2.S1_x_at--1054--2371Chr10:7834104..7834128 (25 bp)
AAACGGCGAGTTGAGGAAGGCATCA
LOC_Os10g15390
Os.17285.2.S1_x_at--107--6311Chr10:7834140..7834164 (25 bp)
GATGAGGTTGATGCTCAGCTACAAA
LOC_Os10g15390
Os.17285.2.S1_x_at--1106--2891Chr10:7834170..7834194 (25 bp)
AAGGAAACGGCTCTGCGTGAAGCCA
LOC_Os10g15390
Os.17285.2.S1_x_at--1143--1931Chr10:7834176..7834200 (25 bp)
ACGGCTCTGCGTGAAGCCAGGCATA
LOC_Os10g15390
Os.17285.2.S1_x_at--399--151Chr10:7834800..7834824 (25 bp)
ATTATGATCTGTTTCATCTGACAAG
LOC_Os10g15390
Os.17285.2.S1_x_at--923--2811Chr10:7834822..7834846 (25 bp)
AAGATTAGGCATACTCGCTCTGTCT
LOC_Os10g15390
Os.17285.2.S1_x_at--275--331Chr10:7834832..7834856 (25 bp)
ATACTCGCTCTGTCTCAAGATATAA
LOC_Os10g15390
Os.17285.2.S1_x_at--1038--9751NONE
TAATGTATCTATCACATTGCTGACG
NONE
Target Sequence 
GGCGCCAAAAGGAAGCTGAACTGAAGTTACTTGAAGAGGAGCTCGCTCGAAGAGTTGAAGAATCTATAAGAAAAAATGTT
GAGGACCGTTTGAACTCCGAGGACATCAAAAATGAAATAAAACGGCGAGTTGAGGAAGGCATCAAGCAGTTATTTGATGA
GGTTGATGCTCAGCTACAAAAAGAGAAGGAAACGGCTCTGCGTGAAGCCAGGCATAAAGCTGAACAAGAAAGAAGAGAGA
GGGAGGAGTTGGATAGGATGCTTGAGGAGAATCGGCGAAAAGTAGAGGAAGCTCAAAGAAAAGAAGCACTGGAACAACAG
CAGAAAGAGCTAGAGCGATTTTTAGAGTTGGAAAGAATTCAAAAGCAAAGGGAAGACNCGATNCGTAGAAAGAAGATAGA
GGAGGAGGAAGATAGAGCTAATCAGATGAAATTACTTGGGAAGAATAACCGTTGATTTGGTTTCAGTATTATGATCTGTT
TCATCTGACAAGATTAGGCATACTCGCTCTGTCTCAAGATATAATGGATTTTTGGTGGATGTGTTATATTTTATTATAAT
GTATCTATCACATTGCTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17285.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis