Browse Element(s) Details


Os.17301.1.S1_at

Description gb:AK068029.1
DB_XREF= gi:32978047
TID=Os.17301.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative homeodomain protein (OSJNBa0053C23.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134A07, full insert sequence.
FL= gb:AK068029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3903011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17301.1.S1_at--513--8911Chr10:20472450..20472474 (25 bp)
TGACCCGTCGCACATCAAACAGGTG
LOC_Os10g39030
Os.17301.1.S1_at--371--1051Chr10:20472430..20472454 (25 bp)
AGGTGGTAGACCGATCGACACGCGC
LOC_Os10g39030
Os.17301.1.S1_at--292--6991Chr10:20472402..20472426 (25 bp)
GTACGACGGAACCAATTGCCGGCGA
LOC_Os10g39030
Os.17301.1.S1_at--189--4011Chr10:20472354..20472378 (25 bp)
CGTGCACAGGCCGATCAATGTCCAA
LOC_Os10g39030
Os.17301.1.S1_at--973--3191Chr10:20472339..20472363 (25 bp)
CAATGTCCAATTTCGCGCATGCTTG
LOC_Os10g39030
Os.17301.1.S1_at--211--1591Chr10:20472278..20472302 (25 bp)
AGCTCTAGCTAGGTTGATGTGATTG
LOC_Os10g39030
Os.17301.1.S1_at--618--8711Chr10:20472160..20472184 (25 bp)
TGTCCCTCTCCTGTACAAGTACGTA
LOC_Os10g39030
Os.17301.1.S1_at--788--6991Chr10:20472142..20472166 (25 bp)
GTACGTATACGCTGCTTTGGATTTA
LOC_Os10g39030
Os.17301.1.S1_at--1017--6931Chr10:20472112..20472136 (25 bp)
GTAGTAGCGATTAGACATCTCGTCG
LOC_Os10g39030
Os.17301.1.S1_at--714--5671Chr10:20472099..20472123 (25 bp)
GACATCTCGTCGCTCGATGGAATTA
LOC_Os10g39030
Os.17301.1.S1_at--823--131Chr10:20472074..20472098 (25 bp)
ATTAATTTTCTTGGCAGCGCGTCTC
LOC_Os10g39030
Target Sequence 
TGACCCGTCGCACATCAAACAGGTGGTAGACCGATCGACACGCGCGCCGTACGACGGAACCAATTGCCGGCGACCCCTCC
TGTACGCGCGTGCGTGCGTGCACAGGCCGATCAATGTCCAATTTCGCGCATGCTTGNGGGGTGGGGATTAATTGGGGGGG
AGTTAGCTAGCTAGCTCTAGCTAGGTTGATGTGATTGACGGGGACGCGCCACCGGCAAAGCTCTCGCTCTCGCNGCGCGG
GCGCGCNGGGCNGACACCGGCATTGGCGCGGCGAGAGAGGGGGGTGCGCGTTGTGTCCCTCTCCTGTACAAGTACGTATA
CGCTGCTTTGGATTTATTTTTGTAGTAGCGATTAGACATCTCGTCGCTCGATGGAATTAATTAATTTTCTTGGCAGCGCG
TCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis