Browse Element(s) Details


Os.17305.1.A1_s_at

Description gb:AU225614
DB_XREF= gi:24208587
DB_XREF=AU225614
CLONE=KP3-0591
TID=Os.17305.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17305 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190276.1 (A.thaliana) protein kinase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4384011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860Os.4608.3.A1_a_at11/116+26410491..26413838Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17305.1.A1_s_at--132--7591Chr06:26403660..26403684 (25 bp)
GGGCATCGGTGGACAAGTTCTCTAC
LOC_Os06g43840
Os.17305.1.A1_s_at--80--2831Chr06:26403674..26403698 (25 bp)
AAGTTCTCTACTGCCAGATCGCGTA
LOC_Os06g43840
Os.17305.1.A1_s_at--140--6391Chr06:26403690..26403714 (25 bp)
GATCGCGTATTTAGGAATTCAGCAC
LOC_Os06g43840
Os.17305.1.A1_s_at--144--3111Chr06:26403722..26403746 (25 bp)
AATATGCCTTCATTTATGTCCCTAG
LOC_Os06g43840
Os.17305.1.A1_s_at--606--771Chr06:26403737..26403761 (25 bp)
ATGTCCCTAGGATCTATCTGTTCAT
LOC_Os06g43840
Os.17305.1.A1_s_at--602--10151Chr06:26403751..26403775 (25 bp)
TATCTGTTCATACCTCTTCATTGTT
LOC_Os06g43840
Os.17305.1.A1_s_at--778--2391Chr06:26403793..26403817 (25 bp)
AAAAAGTTACCAGCCGTGTGTCCAG
LOC_Os06g43840
Os.17305.1.A1_s_at--717--4251Chr06:26403806..26403830 (25 bp)
CCGTGTGTCCAGAAGCATCGCAATG
LOC_Os06g43840
Os.17305.1.A1_s_at--768--10171Chr06:26403910..26403934 (25 bp)
TATAGGGAGCCCAATATGTTTTCCT
LOC_Os06g43840
Os.17305.1.A1_s_at--820--10191Chr06:26403975..26403999 (25 bp)
TATTTGGGAGTCAATCGGTCGGTCG
LOC_Os06g43840
Os.17305.1.A1_s_at--369--3311Chr06:26404062..26404086 (25 bp)
CACAGAGTGAGGTCCTTGCTTGTAA
LOC_Os06g43840
Target Sequence 
GGGCATCGGTGGACAAGTTCTCTACTGCCAGATCGCGTATTTAGGAATTCAGCACTGATATAAATATGCCTTCATTTATG
TCCCTAGGATCTATCTGTTCATACCTCTTCATTGTTTCATATCTTGTAATCAAAAAAAGTTACCAGCCGTGTGTCCAGAA
GCATCGCAATGGACGGTCTCAGATCCATATTCTTTCATTTATACCTTTTGCTTAGAGGTGCGTTTAATAAGTTATTAGTC
TAGAGTCAGTTATAGGGAGCCCAATATGTTTTCCTTTTTTCTTTTTCTCCCCCTTTTCCTGGGTAATAATTGAGTTATTT
GGGAGTCAATCGGTCGGTCGGTCGGAATGTAAACTGATGTTGAAGGGTAATTAAGCTTGGTTGGTCNTTNNCAAGTCTTG
GAACACAGAGTGAGGTCCTTGCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17305.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis