Browse Element(s) Details


Os.17380.1.S1_x_at

Description gb:AK059327.1
DB_XREF= gi:32969345
TID=Os.17380.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A03, full insert sequence.
FL= gb:AK059327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0221410/11Na+/H+ antiporter precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02170Os.5555.1.S1_at10/119+853841..859481UNC-50 family protein, putative, expressed
LOC_Os09g02180Os.12415.1.S1_at1/119+861778..862088expressed protein
LOC_Os09g02190Os.51689.1.S1_at1/119+863748..867401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02200NANA9+872791..873087hypothetical protein
LOC_Os09g02214Os.17380.3.S1_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.4.A1_x_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.1.S1_x_at10/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02230OsAffx.6151.1.S1_at10/119+892123..893709hypothetical protein
LOC_Os09g02240NANA9+899864..900142hypothetical protein
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015385molecular_functionsodium:hydrogen antiporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17380.1.S1_x_at--273--7431Chr09:886220..886244 (25 bp)
GTGTTTAAAGCTCTCACTGGGCTGC
LOC_Os09g02214
Os.17380.1.S1_x_at--709--7811Chr09:886268..886292 (25 bp)
GGTCTTGCAATTCTTTGGATCCTGA
LOC_Os09g02214
Os.17380.1.S1_x_at--320--8971Chr09:886332..886356 (25 bp)
TGAAAGTTCCACAAGCGCTGTCACG
LOC_Os09g02214
Os.17380.1.S1_x_at--757--5211NONE
GAATTCTTATGTCAGTTGGCAGCTT
NONE
Os.17380.1.S1_x_at--283--5271Chr09:887163..887187 (25 bp)
GAATGCCGACCTTATTGCAAGCGCT
LOC_Os09g02214
Os.17380.1.S1_x_at--502--8931Chr09:887250..887274 (25 bp)
TGACCTGACTTCATTTCCTCAAGAT
LOC_Os09g02214
Os.17380.1.S1_x_at--30--1571Chr09:887288..887312 (25 bp)
AGCTTATTGCGTTCTGTGCTGGTAC
LOC_Os09g02214
Os.17380.1.S1_x_at--109--7851Chr09:887308..887332 (25 bp)
GGTACGGGTGGTTCTATGCTTATCA
LOC_Os09g02214
Os.17380.1.S1_x_at--297--631Chr09:887323..887347 (25 bp)
ATGCTTATCATTGGCTCTGCAGCAG
LOC_Os09g02214
Os.17380.1.S1_x_at--24--7931Chr09:887376..887400 (25 bp)
GGATTTCTTTTGGTATTTCCGCAAG
LOC_Os09g02214
Os.17380.1.S1_x_at--1161--7851Chr09:888096..888120 (25 bp)
GGTATCATCACTTATCTAGCTGCAC
LOC_Os09g02214
Target Sequence 
GTGTTTAAAGCTCTCACTGGGCTGCCACCTTTCATGGGCATGATGCTTGGTCTTGCAATTCTTTGGATCCTGACAGATGC
GATACATTATGGGGACTCTGGAAGGCAGAGATTGAAAGTTCCACAAGCGCTGTCACGGATTGATACACAAGGAGTTCTAT
TTTTCTTAGGAATTCTTATGTCAGTTGGCAGCTTGGAATCTGCTGGCATTTTGAGGCAGTTGGCGAACTATCTCGATGCC
AATATTCCGAATGCCGACCTTATTGCAAGCGCTATCGGTGTAGCATCAGCAATTATAGACAATGTTCCACTTGTTGCTGC
AACAATGGGGATGTATGACCTGACTTCATTTCCTCAAGATGCGGACTTTTGGCAGCTTATTGCGTTCTGTGCTGGTACGG
GTGGTTCTATGCTTATCATTGGCTCTGCAGCAGGTGTGGCTTTCATGGGAATGGAAAAGGTGGATTTCTTTTGGTATTTC
CGCAAGGTGAGTGGTTTTGCCCTTGCAGGTTATGCAGCTGGTATCATCACTTATCTAGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17380.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis