Browse Element(s) Details


Os.17380.4.A1_x_at

Description gb:AK058682.1
DB_XREF= gi:32968700
TID=Os.17380.4
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A05, full insert sequence.
FL= gb:AK058682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0221411/11Na+/H+ antiporter precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02170Os.5555.1.S1_at10/119+853841..859481UNC-50 family protein, putative, expressed
LOC_Os09g02180Os.12415.1.S1_at1/119+861778..862088expressed protein
LOC_Os09g02190Os.51689.1.S1_at1/119+863748..867401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02200NANA9+872791..873087hypothetical protein
LOC_Os09g02214Os.17380.3.S1_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.4.A1_x_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.1.S1_x_at10/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02230OsAffx.6151.1.S1_at10/119+892123..893709hypothetical protein
LOC_Os09g02240NANA9+899864..900142hypothetical protein
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015385molecular_functionsodium:hydrogen antiporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17380.4.A1_x_at--986--9471Chr09:887338..887362 (25 bp)
TCTGCAGCAGGTGTGGCTTTCATGG
LOC_Os09g02214
Os.17380.4.A1_x_at--23--7931Chr09:887376..887400 (25 bp)
GGATTTCTTTTGGTATTTCCGCAAG
LOC_Os09g02214
Os.17380.4.A1_x_at--314--2891Chr09:888061..888084 (24 bp)
AAGGTGAGTGGTTTTGCCCTTGCAG
LOC_Os09g02214
Os.17380.4.A1_x_at--777--3471Chr09:888082..888106 (25 bp)
CAGGTTATGCAGCTGGTATCATCAC
LOC_Os09g02214
Os.17380.4.A1_x_at--1160--7851Chr09:888096..888120 (25 bp)
GGTATCATCACTTATCTAGCTGCAC
LOC_Os09g02214
Os.17380.4.A1_x_at--623--2051Chr09:888144..888168 (25 bp)
ACTTCACTAGCCGAGATCCCATTTA
LOC_Os09g02214
Os.17380.4.A1_x_at--1149--3571Chr09:888214..888238 (25 bp)
CATATTTTATTGTCTGGCCAGCTTA
LOC_Os09g02214
Os.17380.4.A1_x_at--132--9851Chr09:888311..888335 (25 bp)
TAAATATATGCCCTGATCTCCAACC
LOC_Os09g02214
Os.17380.4.A1_x_at--855--9291Chr09:888344..888368 (25 bp)
TCCCAACATTGACCGGAAGGCTTTG
LOC_Os09g02214
Os.17380.4.A1_x_at--995--5891Chr09:888433..888457 (25 bp)
GAGCTGCACGCTTGTAATTCACGAA
LOC_Os09g02214
Os.17380.4.A1_x_at--534--1851Chr09:888453..888477 (25 bp)
ACGAATTCTATTCCATCTTGTTGAG
LOC_Os09g02214
Target Sequence 
TCTGCAGCAGGTGTGGCTTTCATGGGAATGGAAAAGGTGGATTTCTTTTGGTATTTCCGCAAGGTGAGTGGTTTTGCCCT
TGCAGGTTATGCAGCTGGTATCATCACTTATCTAGCTGCACAAAATCTCCCTCTATCCCTTCCCACTTCACTAGCCGAGA
TCCCATTTATCTCGGGGTCATGAAAGGGTGACCAGATTCAGGTATGGAAATGGACATATTTTATTGTCTGGCCAGCTTAT
GTAAGCATAATCAGGATGTGTTGGCAAAGAAAAGATGTCCCATGATTACATGGGATGGAATAAACGAAAAATAAATATAT
GCCCTGATCTCCAACCTCCAAGTTTCCCAACATTGACCGGAAGGCTTTGGGGTGCTGGTGAACTATGGTATGCTAGAAGA
GAGGAGCGATTTTGATAACNCAAGCTTAGAGGCTAGAGCTGCACGCTTGTAATTCACGAATTCTATTCCATCTTGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17380.4.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis