Browse Element(s) Details


Os.17385.1.S1_at

Description gb:AK120136.1
DB_XREF= gi:37989759
TID=Os.17385.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027G24, full insert sequence.
FL= gb:AK120136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3934411/11enoyl-CoA hydratase/isomerase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39300NANA6+23320521..23323294hypothetical protein
LOC_Os06g39310OsAffx.20387.1.S1_x_at1/116+23325561..23327282transposon protein, putative, unclassified
LOC_Os06g39320NANA6+23327796..23329486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g39330Os.51337.1.S1_at11/116+23332386..23334033UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39344Os.17385.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39344Os.6374.1.S1_at11/116+23342944..23349820enoyl-CoA hydratase/isomerase family protein, putative, expressed
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17385.1.S1_at--965--9871Chr06:23348759..23348783 (25 bp)
TACTTTTCGCGGAGCTATCCACTAA
LOC_Os06g39344
Os.17385.1.S1_at--247--10311Chr06:23348763..23348787 (25 bp)
TTTCGCGGAGCTATCCACTAATGGA
LOC_Os06g39344
Os.17385.1.S1_at--126--9211Chr06:23348776..23348800 (25 bp)
TCCACTAATGGATCGAAACTTCTGT
LOC_Os06g39344
Os.17385.1.S1_at--3--5551Chr06:23348790..23348814 (25 bp)
GAAACTTCTGTCAATGAAATTCTGA
LOC_Os06g39344
Os.17385.1.S1_at--10--3131Chr06:23348807..23348831 (25 bp)
AATTCTGAAGAACACTTCGTACTAC
LOC_Os06g39344
Os.17385.1.S1_at--584--9151Chr06:23348916..23348940 (25 bp)
TGCGACTTCTGGGAAAGAGGGATAC
LOC_Os06g39344
Os.17385.1.S1_at--183--8611Chr06:23349065..23349089 (25 bp)
TGGTGTGTTTTGTTTAACTAATGGT
LOC_Os06g39344
Os.17385.1.S1_at--986--2531Chr06:23349080..23349104 (25 bp)
AACTAATGGTGTTATGTCTCTAGAG
LOC_Os06g39344
Os.17385.1.S1_at--406--7431Chr06:23349088..23349112 (25 bp)
GTGTTATGTCTCTAGAGTTAGGATT
LOC_Os06g39344
Os.17385.1.S1_at--804--11Chr06:23349114..23349138 (25 bp)
ATAGAACTAGATAAAACCCCACGCA
LOC_Os06g39344
Os.17385.1.S1_at--633--9112Chr06:23349140..23349164 (25 bp)
TGCTGCGGAGTTTTGTATGATATTA
LOC_Os06g39344
Target Sequence 
TACTTTTCGCGGAGCTATCCACTAATGGATCGAAACTTCTGTCAATGAAATTCTGAAGAACACTTCGTACTACNANGAGT
TTGAACANTTTCTCTGAGTTGTTAATAAGAAGTAAACCANGTAGAGGTAGACCTTAGAATTCAANCCANTGTCTTGCGCA
CNTGTGCGACTTCTGGGAAAGAGGGATACAGACANTTATAGCATGTGTGGCACNGGTGCNAAGTTCACTCTCCTTTGCCT
TGCTAGANNNCATANGCNACNATAGCTGTTCTTTTTCCATATACCNTAGTAATAATATAAAAAGGCNACNATAGTTACAN
TGTGTGGTGTGTTTTGTTTAACTAATGGTGTTATGTCTCTAGAGTTAGGATTAATAGAACTAGATAAAACCCCACGCANT
TGCTGCGGAGTTTTGTATGATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis