Browse Element(s) Details


Os.17403.1.S1_a_at

Description gb:AK068729.1
DB_XREF= gi:32978746
TID=Os.17403.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158M19, full insert sequence.
FL= gb:AK068729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4207011/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os06g200401/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42060OsAffx.25481.1.S1_at10/113+23341345..23341987hypothetical protein
LOC_Os03g42070Os.17403.1.S1_a_at11/113+23364503..23367047Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g42080OsAffx.3481.1.S1_at11/113+23371745..23372125expressed protein
LOC_Os03g42090OsAffx.25482.1.S1_at11/113+23379126..23379539hypothetical protein
LOC_Os03g42100OsAffx.13300.1.S1_at11/113+23387610..23389006Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0006508biological_processproteolysis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17403.1.S1_a_at--140--4931Chr03:23365070..23365094 (25 bp)
GCTTGATCGAGCTTCTCCTAAGGAG
LOC_Os03g42070
Os.17403.1.S1_a_at--426--2411Chr03:23364956..23364980 (25 bp)
AAACACTTTAGCCTGCACATTGCAC
LOC_Os03g42070
Os.17403.1.S1_a_at--636--6091Chr03:23364838..23364862 (25 bp)
GAGTAATGTCTAATCCGTCTGCCAG
LOC_Os03g42070
Os.17403.1.S1_a_at--404--3392Chr06:11491394..11491461 (25 bp)
CAGCTGCAAGTACCATGGTCCATGG
LOC_Os06g20040
Os.17403.1.S1_a_at--537--7271Chr03:23364752..23364776 (25 bp)
GTCCATGGCCTTAACTCTGATTTGA
LOC_Os03g42070
Os.17403.1.S1_a_at--208--6531Chr03:23364734..23364758 (25 bp)
GATTTGATCAAAAGCCTTCTCCTGC
LOC_Os03g42070
Os.17403.1.S1_a_at--248--1691Chr03:23364722..23364746 (25 bp)
AGCCTTCTCCTGCTCAAAGTGAGTG
LOC_Os03g42070
Os.17403.1.S1_a_at--124--7471Chr03:23364690..23364714 (25 bp)
GTGTGCGCGCGCATGTTGCTACTAT
LOC_Os03g42070
Os.17403.1.S1_a_at--764--3012Chr03:23364641..23364665 (25 bp)
AATGCATGTGGCTGCTACACTGGTT
LOC_Os03g42070
Os.17403.1.S1_a_at--25--9871Chr03:23364626..23364650 (25 bp)
TACACTGGTTGCCTGTAACCTGTAG
LOC_Os03g42070
Os.17403.1.S1_a_at--62--4451Chr03:23364589..23364613 (25 bp)
GCCATTGTTGTAGCCTTTGCAACTT
LOC_Os03g42070
Target Sequence 
GCTTGATCGAGCTTCTCCTAAGGAGAGGAGAAAACTCAAACTGCTCGTGTGAGACAGTGACAGAGTGAGTGAGAGTGAGA
GTGTATCACTGTACACAAGGATGGAAGAAAAAAAAAACACTTTAGCCTGCACATTGCACTCACACTGCACTTCCCGGGAA
GGAGTCAAGAAGAAGAGAGAGAAGCTGAAGAACAGTGCTACTAGGAACAGTAGCTGCAGATAAAAACGATGGGAGTAATG
TCTAATCCGTCTGCCAGTTCAATGCAAGCGAAGGAGAGAGCAAAGAAAGCTGTTGCTGCAGCAGCTGCAAGTACCATGGT
CCATGGCCTTAACTCTGATTTGATCAAAAGCCTTCTCCTGCTCAAAGTGAGTGTGTGTGTGTGTGCGCGCGCATGTTGCT
ACTATGGCGGCGCCGGTGCATGGCTGCCAAATGCATGTGGCTGCTACACTGGTTGCCTGTAACCTGTAGTAGTGAGCTAC
TGCCATTGTTGTAGCCTTTGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17403.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis