Browse Element(s) Details


Os.17432.1.S1_at

Description gb:AK059571.1
DB_XREF= gi:32969589
TID=Os.17432.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A02, full insert sequence.
FL= gb:AK059571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g437005/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed
LOC_Os04g43710Os.18633.1.S1_at11/114+25648722..25650103phosphoenolpyruvate carboxylase kinase 4, putative, expressed
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17432.1.S1_at--639--8131Chr04:25645896..25645920 (25 bp)
GGACATAGTCGTTTTGATTCATCAG
LOC_Os04g43700
Os.17432.1.S1_at--330--2371Chr04:25645922..25646015 (25 bp)
AAACCACATGGTTACAGGCCGGCAC
LOC_Os04g43700
Os.17432.1.S1_at--1021--7091Chr04:25646082..25646106 (25 bp)
GTCACTGTATTGTTACCGACTCTCT
LOC_Os04g43700
Os.17432.1.S1_at--1146--10451Chr04:25646094..25646118 (25 bp)
TTACCGACTCTCTTGGGTGTGACTG
LOC_Os04g43700
Os.17432.1.S1_at--302--7471Chr04:25646110..25646132 (23 bp)
GTGTGACTGCATTATTTGCGAAGCT
LOC_Os04g43700
Os.17432.1.S1_at--663--6631Chr04:25646575..25646599 (25 bp)
GTTGTGCTTGCATCTTTTATGACAT
NONE
Os.17432.1.S1_at--645--10211NONE
TATTGCTATCTCTGCCTTTTACAAG
NONE
Os.17432.1.S1_at--990--1531Chr04:25646668..25646691 (24 bp)
AGCATCTGCTTCTTGTTTTAGTCGT
NONE
Os.17432.1.S1_at--164--8771Chr04:25646681..25646706 (25 bp)
TGTTTTAGTCGTTAACCCTGCTCCT
NONE
Os.17432.1.S1_at--1062--6971Chr04:25646727..25646751 (25 bp)
GTACCATATGTACCATCCATGTTGT
NONE
Os.17432.1.S1_at--9--6651Chr04:25646747..25646771 (25 bp)
GTTGTATCCTATGTCTTTTACACAA
NONE
Target Sequence 
GGACATAGTCGTTTTGATTCATCAGAAAACCACATGGTTACAGGCCGGCACCATAATATGTCTGACTGTGACATAGATGC
AACATTTTACTGGACAGGGATGGCAATTATAGCTATTGTCACTGTATTGTTACCGACTCTCTTGGGTGTGACTGCATTAT
TTGCGAAGCTAGGATTGATGGTTGCTGGTGGTGTTGTGCTTGCATCTTTTATGACATACGCTTCAGAGCATATTGCTATC
TCTGCCTTTTACAAGGGTCAGAGAGATAGAAATGTGTCCAGAAGTAGAAGCATCTGCTTCTTGTTTTAGTCGTTAACCCT
GCTCCTACGCAATTCATTTAGTTCATGTACCATATGTACCATCCATGTTGTATCCTATGTCTTTTACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis