Browse Element(s) Details


Os.17465.1.S1_x_at

Description gb:CB624010
DB_XREF= gi:29618998
DB_XREF=OSIIEa12C16.f
CLONE=OSIIEa12C16
TID=Os.17465.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17465 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176287.1 (A.thaliana) putative U2 snRNP auxiliary factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g621601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17465.1.S1_x_at--354--4811NONE
GCTCTTCCTCGATACATGTATGACC
NONE
Os.17465.1.S1_x_at--698--1431NONE
AGAACATCGGTGATCCACACTTGCT
NONE
Os.17465.1.S1_x_at--806--4831Chr03:35149587..35149611 (25 bp)
GCTCAAGTCTCTATACACCAATGAT
LOC_Os03g62160
Os.17465.1.S1_x_at--367--9291NONE
TCCGTTGTGTTGACCATCAGCAGTT
NONE
Os.17465.1.S1_x_at--1048--4031NONE
CGTTGTGTTGACCATCAGCAGTTGT
NONE
Os.17465.1.S1_x_at--354--10831NONE
TTGTGTTGACCATCAGCAGTTGTTC
NONE
Os.17465.1.S1_x_at--888--7411NONE
GTGTTGACCATCAGCAGTTGTTCCA
NONE
Os.17465.1.S1_x_at--268--8811Chr04:19089271..19089352 (25 bp)
TGTTGACCATCAGCAGTTGTTCCAC
NONE
Os.17465.1.S1_x_at--235--6651NONE
GTTGACCATCAGCAGTTGTTCCACG
NONE
Os.17465.1.S1_x_at--794--10751NONE
TTGACCATCAGCAGTTGTTCCACGT
NONE
Os.17465.1.S1_x_at--369--8931NONE
TGACCATCAGCAGTTGTTCCACGTC
NONE
Target Sequence 
GCTCTTCCTCGATACATGTATGACCCTATGTGGCGCCCCCGAACCTTGTGGGTCCGGCGGNCACAGNACTGTACCTGTGC
ANCNNGTACCAGTCCCANGATACNCAANCTGGTACACNCAGAACATCGGTGATCCACACTTGCTTAATTTGTGCCGAATT
GNGCTCAAGTCTCTATACACCAATGATATGTTATGAGNTCCGTTGTGTTGACCATCAGCAGTTGTTCCACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17465.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis