Browse Element(s) Details


Os.17486.1.S1_at

Description gb:AK103089.1
DB_XREF= gi:32988298
TID=Os.17486.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118J02, full insert sequence.
FL= gb:AK103089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g073009/11D-mannose binding lectin family protein, expressed
LOC_Os04g148402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g074501/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07300Os.17486.1.S1_at9/115+3856219..3859043D-mannose binding lectin family protein, expressed
LOC_Os05g07310OsAffx.13097.1.S1_s_at11/115+3861022..3868072transposon protein, putative, Mutator sub-class
LOC_Os05g07320NANA5+3872328..3873007hypothetical protein
LOC_Os05g07330NANA5+3874786..3878162retrotransposon protein, putative, unclassified
LOC_Os05g07340OsAffx.22492.1.S1_at1/115+3878783..3884954retrotransposon protein, putative, unclassified
LOC_Os05g07340OsAffx.22492.1.S1_x_at1/115+3878783..3884954retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17486.1.S1_at--49--2811Chr05:3856794..3856818 (25 bp)
AAGTTGCCTTTTTCCCTGTGCAAGC
LOC_Os05g07300
Os.17486.1.S1_at--482--7272Chr05:3856744..3856768 (25 bp)
GTCCAGAGTTTGGTAGACCCGCAGT
LOC_Os05g07300
Os.17486.1.S1_at--705--7872Chr05:3856603..3856627 (25 bp)
GGTTTACAGGAGCTTGATATGCCTC
LOC_Os05g07300
Os.17486.1.S1_at--1151--3331Chr05:3856572..3856596 (25 bp)
CACGGCTACTTGCAGCTTTAGCAGA
LOC_Os05g07300
Os.17486.1.S1_at--567--3011Chr05:3856548..3856572 (25 bp)
AATGCACTGTTGTGGCTCACTGTGA
LOC_Os05g07300
Os.17486.1.S1_at--114--3091NONE
AATAGAGTTACATGCCCGATGCCTA
NONE
Os.17486.1.S1_at--208--611Chr05:3856341..3856365 (25 bp)
ATGCCCGATGCCTATGTTTTGTTGA
LOC_Os05g07300
Os.17486.1.S1_at--955--6752Chr05:3856282..3856306 (25 bp)
GTTAATCTATGCCACTACTTGCTGC
LOC_Os05g07300
Os.17486.1.S1_at--312--2071Chr05:3856266..3856290 (25 bp)
ACTTGCTGCATGCTTGCTTCAGAGA
LOC_Os05g07300
Os.17486.1.S1_at--283--4931Chr05:3856255..3856279 (25 bp)
GCTTGCTTCAGAGATGTCAGTTCTA
LOC_Os05g07300
Os.17486.1.S1_at--349--3131Chr05:3856219..3856243 (25 bp)
AATTTACTGCATGCTTGCTTCAGAG
NONE
Target Sequence 
AAGTTGCCTTTTTCCCTGTGCAAGCCATTAGCAAGCTTCATGAGGGAGATGTCCAGAGTTTGGTAGACCCGCAGTTAAAT
GGTGACTTCAGTCTAGTAGAGGTTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAGAATGAGATTGATCGGCC
AACAATGAATGAAGTGGTCCGGGTTCTTGAGGGTTTACAGGAGCTTGATATGCCTCCAATGCCACGGCTACTTGCAGCTT
TAGCAGAATGCACTGTTGTGGCTCACTGTGATGATGATTCATAAGTACTTCCTAGTTGATGTTAATAATATTTGTCTTAG
AAAATTTTGAGGTTCTAACATGAGTGGAAGAAAAGGAATGTAAGCTGGGTAGTGCTAAATTGTAACGCATTTTTTCAATA
ACCAATTGTTGTAAGCAGGCATTACAGCAAAGATTTGGCAGAAATAGAGTTACATGCCCGATGCCTATGTTTTGTTGATG
GTCTAGTTGGCATATATTGTTAAACTCAACAAGTTAATCTATGCCACTACTTGCTGCATGCTTGCTTCAGAGATGTCAGT
TCTAAAAAAATAAAAAATTTACTGCATGCTTGCTTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis