Browse Element(s) Details


Os.17491.1.S1_at

Description gb:BI812940
DB_XREF= gi:16578845
DB_XREF=G006A06
CLONE=G006A06
TID=Os.17491.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha-galactosidase (OSJNBa0051D19.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g350705/11Alpha-galactosidase precursor, putative, expressed
LOC_Os06g336101/11Cyclic nucleotide-gated ion channel 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004557molecular_functionalpha-galactosidase activity
GO:0005216molecular_functionion channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17491.1.S1_at--1067--531Chr10:18381320..18381430 (25 bp)
ATCGCCGTCAACCAAGATGCTCTGG
LOC_Os10g35070
Os.17491.1.S1_at--1068--4151Chr10:18381322..18381432 (25 bp)
CGCCGTCAACCAAGATGCTCTGGGC
LOC_Os10g35070
Os.17491.1.S1_at--1024--3851Chr10:18381487..18381511 (25 bp)
CTGTCGGGTTACAGGACGGCGGTGC
LOC_Os10g35070
Os.17491.1.S1_at--421--6431Chr10:18381546..18381570 (25 bp)
GATCACCGCGCACTGGGACGACGTC
LOC_Os10g35070
Os.17491.1.S1_at--388--3791Chr10:18381714..18381738 (25 bp)
CTCGTCCCGGGCCAACTGAGACGAG
LOC_Os10g35070
Os.17491.1.S1_at--514--251NONE
ATATCCCTGTCTTTTTCTTCGGACA
NONE
Os.17491.1.S1_at--885--9552Chr12:18014432..18014686 (25 bp)
TCTTTTTCTTCGGACAATAGAGTAT
NONE
Os.17491.1.S1_at--279--7932Chr11:21036455..21036479 (25 bp)
GGATATTTATCTTTAAACGCCAAGT
NONE
Os.17491.1.S1_at--1071--10475Chr11:21036467..21036491 (25 bp)
TTAAACGCCAAGTTTCCTAGCCATT
NONE
Os.17491.1.S1_at--756--2593Chr11:21036470..21036494 (25 bp)
AACGCCAAGTTTCCTAGCCATTTAT
NONE
Os.17491.1.S1_at--11--68521Chr12:18014716..18014740 (25 bp)
GTTTCCTAGCCATTTATCTTCCCAG
NONE
Target Sequence 
ATCGCCGTCAACCAAGATGCTCTGGGCATCCAGGGGAAGAAGGTGAGGATGGAGGGCAGCAGCGAGGTGTGGNCGGCGCC
GCTGTCGGGTTACAGGACGGCGGTGCTGCTGCTGAACCGGCACGCGGCGGAGGCGGCGGCGATCACCGCGCACTGGGACG
ACGTCGGCCTCCCCGCCGGCACCGCCGTCGAGGCCAGGGACCTGTGGCGGCACGCGACGGTGGCCGGCGCCGGCGGCGAG
TTGACGGAGAAGATCACCCTCGACGTGGCGCCGCACTCGTGCAGGATGCTCCTGCTCAAGCCCCTCATCTCGTCCCGGGC
CAACTGAGACGAGCGGGCGAGCGAGCGAGCTCGCCGCCGGCGAGCAGGGCTCTCCGGGCGTCCTCGCCGTGACATTTTTT
TTTNAGATAATGGAATAAATATCCCTGTCTTTTTCTTCGGACAATAGAGTATAAAGATGGATATTTATCTTTAAACGCCA
AGTTTCCTAGCCATTTATCTTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis