Browse Element(s) Details


Os.17516.1.S1_at

Description gb:AK122179.1
DB_XREF= gi:37991825
TID=Os.17516.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149C03, full insert sequence.
FL= gb:AK122179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4084011/11radical SAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17516.1.S1_at--711--4931Chr04:24019210..24019234 (25 bp)
GCTTGTTAGGCGTGACTATGCTGCA
LOC_Os04g40840
Os.17516.1.S1_at--817--7631Chr04:24019175..24019199 (25 bp)
GGGAGACCTTTCTCTCATACGAGGA
LOC_Os04g40840
Os.17516.1.S1_at--129--1011Chr04:24018864..24018888 (25 bp)
AGGATATCCTTATTGGTCTGCTGCG
LOC_Os04g40840
Os.17516.1.S1_at--429--8591Chr04:24018851..24018875 (25 bp)
TGGTCTGCTGCGATTGCGAAAATGT
LOC_Os04g40840
Os.17516.1.S1_at--286--7551Chr04:24018828..24018852 (25 bp)
GTGGCCGCAATGTTACATGCCCTGA
LOC_Os04g40840
Os.17516.1.S1_at--911--6871Chr04:24018766..24018790 (25 bp)
GTATATGGAACTGCAGTCCCTGTAC
LOC_Os04g40840
Os.17516.1.S1_at--359--1151Chr04:24018752..24018776 (25 bp)
AGTCCCTGTACATGGTCGTGATGCA
LOC_Os04g40840
Os.17516.1.S1_at--290--4351Chr04:24018332..24018355 (24 bp)
CCAGGGTTATGGTACTCTTTTGATG
LOC_Os04g40840
Os.17516.1.S1_at--1065--231Chr04:24018253..24018277 (25 bp)
ATATCAGGAGTTGGGACTCGCCACT
LOC_Os04g40840
Os.17516.1.S1_at--134--9331Chr04:24018236..24018260 (25 bp)
TCGCCACTACTACCGTAAACTGGGT
LOC_Os04g40840
Os.17516.1.S1_at--293--10111Chr04:24018158..24018182 (25 bp)
TATGGATGCTTGTACTCCAGCAGCA
LOC_Os04g40840
Target Sequence 
GCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTA
TTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTCAATTGTCCGTGAA
CTTCATGTATATGGAACTGCAGTCCCTGTACATGGTCGTGATGCAGACAAACTACAACACCAGGGTTATGGTACTCTTTT
GATGGAAGAAGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCGCC
ACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGAT
GCTTGTACTCCAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis