Browse Element(s) Details


Os.17532.2.S1_at

Description gb:NM_188371.1
DB_XREF= gi:34903825
GEN=OSJNBa0016I09.26
TID=Os.17532.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.26 (OSJNBa0016I09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.26 (OSJNBa0016I09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1107011/11curculin-like lectin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005529molecular_functionsugar binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17532.2.S1_at--678--5511Chr01:5912840..5912864 (25 bp)
GAACAATATGTATTTTCTCTTGCCT
LOC_Os01g11070
Os.17532.2.S1_at--396--3111Chr01:5912844..5912868 (25 bp)
AATATGTATTTTCTCTTGCCTTTAA
LOC_Os01g11070
Os.17532.2.S1_at--900--8751Chr01:5912848..5912872 (25 bp)
TGTATTTTCTCTTGCCTTTAAACTT
LOC_Os01g11070
Os.17532.2.S1_at--1023--10291Chr01:5912853..5912877 (25 bp)
TTTCTCTTGCCTTTAAACTTTACAG
LOC_Os01g11070
Os.17532.2.S1_at--121--2531Chr01:5912868..5912892 (25 bp)
AACTTTACAGCACATATTTTCTCTT
LOC_Os01g11070
Os.17532.2.S1_at--498--3411Chr01:5912875..5912899 (25 bp)
CAGCACATATTTTCTCTTGACAATA
LOC_Os01g11070
Os.17532.2.S1_at--558--3571Chr01:5912880..5912904 (25 bp)
CATATTTTCTCTTGACAATACTCCG
LOC_Os01g11070
Os.17532.2.S1_at--814--3091Chr01:5912896..5912920 (25 bp)
AATACTCCGAGTAACAACCTCCTTG
LOC_Os01g11070
Os.17532.2.S1_at--404--6091Chr01:5912904..5912928 (25 bp)
GAGTAACAACCTCCTTGCACTTCTG
LOC_Os01g11070
Os.17532.2.S1_at--207--2451Chr01:5912908..5912932 (25 bp)
AACAACCTCCTTGCACTTCTGGTTG
LOC_Os01g11070
Os.17532.2.S1_at--546--5111Chr01:5912920..5912944 (25 bp)
GCACTTCTGGTTGCAGCTGAAAGAC
LOC_Os01g11070
Target Sequence 
GAACAATATGTATTTTCTCTTGCCTTTAAACTTTACAGCACATATTTTCTCTTGACAATACTCCGAGTAACAACCTCCTT
GCACTTCTGGTTGCAGCTGAAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17532.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis