Browse Element(s) Details


Os.17555.1.S1_at

Description gb:AK071656.1
DB_XREF= gi:32981679
TID=Os.17555.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103O13, full insert sequence.
FL= gb:AK071656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5419011/11Serine/threonine-protein kinase receptor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17555.1.S1_at--966--571Chr04:32059536..32059560 (25 bp)
ATCCAGGTTGGTCTTCTGTGCGTGC
LOC_Os04g54190
Os.17555.1.S1_at--1122--9451Chr04:32059522..32059546 (25 bp)
TCTGTGCGTGCAGGAATTACCAGGT
LOC_Os04g54190
Os.17555.1.S1_at--798--2931Chr04:32059349..32059373 (25 bp)
AAGGCAGATAGCTCCTTGTCAGTGC
LOC_Os04g54190
Os.17555.1.S1_at--401--10011Chr04:32059341..32059365 (25 bp)
TAGCTCCTTGTCAGTGCCTCTGAAT
LOC_Os04g54190
Os.17555.1.S1_at--620--7931Chr04:32059294..32059318 (25 bp)
GGATTACTGAAGTTGGTGTCTCTCA
LOC_Os04g54190
Os.17555.1.S1_at--512--2811Chr04:32059285..32059309 (25 bp)
AAGTTGGTGTCTCTCATTTTCCCTG
LOC_Os04g54190
Os.17555.1.S1_at--410--7311Chr04:32059254..32059278 (25 bp)
TGTTGTTAACCTAGTAATAAACCTG
LOC_Os04g54190
Os.17555.1.S1_at--633--10051Chr04:32059198..32059222 (25 bp)
TATGTGGAACTGTAAGCGTATTTGG
LOC_Os04g54190
Os.17555.1.S1_at--681--8191Chr04:32059168..32059192 (25 bp)
GGAATGCCGTTTGTTTATACATCTG
LOC_Os04g54190
Os.17555.1.S1_at--296--331Chr04:32059152..32059176 (25 bp)
ATACATCTGGGTATCAGGGTATGCA
LOC_Os04g54190
Os.17555.1.S1_at--109--6871Chr04:32059142..32059166 (25 bp)
GTATCAGGGTATGCAACACCAGGAA
LOC_Os04g54190
Target Sequence 
ATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGG
GGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGG
GGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAANCTTGCCAA
NCCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTT
GTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGNANTGGAATGCCGTTTGTTTATACATCTGGGTAT
CAGGGTATGCAACACCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis