Browse Element(s) Details


Os.17567.2.S1_a_at

Description gb:AK099237.1
DB_XREF= gi:32984446
TID=Os.17567.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112C23, full insert sequence.
FL= gb:AK068501.1 gb:AK099237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3204011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17567.2.S1_a_at--1134--3611Chr09:19122121..19122145 (25 bp)
CTTGCTCGATTCTGTTCCTAGCAGT
LOC_Os09g32040
Os.17567.2.S1_a_at--451--8811Chr09:19122109..19122133 (25 bp)
TGTTCCTAGCAGTCCAGCTATGGCT
LOC_Os09g32040
Os.17567.2.S1_a_at--1128--1411Chr09:19122063..19122087 (25 bp)
AGAACACTGCAACGCATTTCGAGCT
LOC_Os09g32040
Os.17567.2.S1_a_at--585--4951Chr09:19122050..19122074 (25 bp)
GCATTTCGAGCTTTAGGTCACAACA
LOC_Os09g32040
Os.17567.2.S1_a_at--1036--3432Chr01:29018783..29019238 (25 bp)
CAGTACTCTTATCAACACCAGAAGA
NONE
Os.17567.2.S1_a_at--247--7731Chr09:19121973..19121997 (25 bp)
GGTGGGCTAATTTTCATCTCGTTAA
LOC_Os09g32040
Os.17567.2.S1_a_at--81--3631Chr09:19121940..19121964 (25 bp)
CTTGTTGCTATCATGTGGACCTTTA
LOC_Os09g32040
Os.17567.2.S1_a_at--1086--5331Chr09:19121878..19121902 (25 bp)
GAAGTTTCCCTCTACATAATAGGAT
LOC_Os09g32040
Os.17567.2.S1_a_at--856--3131Chr09:19121806..19121830 (25 bp)
AATTCTTGTTTTGCTATCCTTTCCT
LOC_Os09g32040
Os.17567.2.S1_a_at--436--4311Chr09:19121789..19121813 (25 bp)
CCTTTCCTCTATTCCTTTACATTGA
LOC_Os09g32040
Os.17567.2.S1_a_at--693--732Chr09:19121638..19121662 (25 bp)
ATGTTTTTGTCCTCATCATTTTGAT
LOC_Os09g32040
Target Sequence 
CTTGCTCGATTCTGTTCCTAGCAGTCCAGCTATGGCTGCTGAAAACATAGGTCTTAACAGAACACTGCAACGCATTTCGA
GCTTTAGGTCACAACAACCTGCAAGAGAAGAAGTTAGCAGTACTCTTATCAACACCAGAAGAAGAGGCGGTGGGCTAATT
TTCATCTCGTTAATGGTTTTACTTGTTGCTATCATGTGGACCTTTAGCAATGGGTCTGCAGTCAAGCTTAGCAAGGGGTT
ATGGAAGTTTCCCTCTACATAATAGGATGCACCCGGTTATCCTGGTGGCCAGTGCTTCTTACTACTTCAAGTACTAATTC
TTGTTTTGCTATCCTTTCCTCTATTCCTTTACATTGAAAAAGGCAACAATCTAGGAAAATATTAGAGGATTATGTGGTGT
TAGCACTTACTTTCAGAATATTATGCGAGAGATGTTAAAACAAAACAAAATGAGAAAAAGAAACATCTGAGGTGAACTTC
TGGATGTTTTTGTCCTCATCATTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17567.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis