Browse Element(s) Details


Os.17577.4.A1_x_at

Description gb:AK102626.1
DB_XREF= gi:32987835
TID=Os.17577.4
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099J19, full insert sequence.
FL= gb:AK102626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g390602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39080NANA1+22294831..22295418hypothetical protein
LOC_Os01g39090OsAffx.11383.1.S1_at11/111+22298067..22298312hypothetical protein
LOC_Os01g39100OsAffx.2191.1.S1_at11/111+22300534..22307329Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17577.4.A1_x_at--159--10592Chr09:12896364..12896388 (25 bp)
TTCTGCCACCAGATTAAGCTCACAG
NONE
Os.17577.4.A1_x_at--380--1132Chr09:12896633..12896657 (25 bp)
AGTGCAGATTGCAGGTCGACCCTCA
NONE
Os.17577.4.A1_x_at--903--7733Chr10:3701710..3701735 (25 bp)
GGTGGTTAGCTTTGCAGCAGCCAAC
NONE
Os.17577.4.A1_x_at--366--9712Chr09:12896702..12896726 (25 bp)
TCAACTTACACAATCTGCATCTTCC
NONE
Os.17577.4.A1_x_at--284--4971Chr09:12896718..12896742 (25 bp)
GCATCTTCCACTTTTATAGGACACA
NONE
Os.17577.4.A1_x_at--605--4812Chr09:12896767..12896791 (25 bp)
GCTCTGTGAAAGTTACCTGCATCTT
NONE
Os.17577.4.A1_x_at--541--4972Chr09:12896785..12896809 (25 bp)
GCATCTTCAGTAGTCGCTGCTATTA
NONE
Os.17577.4.A1_x_at--696--112Chr09:12896833..12896857 (25 bp)
ATTCTCTCTATTATCCTTTGCTTGC
NONE
Os.17577.4.A1_x_at--984--10272Chr09:12896849..12896873 (25 bp)
TTTGCTTGCGGTCTATCTAACTTCA
NONE
Os.17577.4.A1_x_at--8--5112Chr09:12896886..12896910 (25 bp)
GCACGTGACCTATAACTGCTTATCA
NONE
Os.17577.4.A1_x_at--1134--10412Chr09:12896905..12896929 (25 bp)
TTATCATTGTCCTCAGCTCCTTTTG
NONE
Target Sequence 
TTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAN
AGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACANGAGTGTACTTTGCGACNGAGTTTTCAAAGAAATA
CATTGTGAACTTGGTTCGAGGCAAGACAGCNAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGG
GTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTATAGGACACAAGTCACCTCAN
GCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACNCTGGAACANCTACTATAA
TTCTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCNGTAAGCACGTGACCTATAACTGCTTATCATTG
TCCTCAGCTCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17577.4.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis