Browse Element(s) Details


Os.17617.1.S1_at

Description gb:BI813215
DB_XREF= gi:16579120
DB_XREF=J007d10
CLONE=J007d10
TID=Os.17617.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17617 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g428206/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17617.1.S1_at--188--5451NONE
GAACCCTTTGTTATCCATATGTGTC
NONE
Os.17617.1.S1_at--763--6791NONE
GTTATCCATATGTGTCTGATGTTTT
NONE
Os.17617.1.S1_at--527--7451Chr01:24695921..24695945 (25 bp)
GTGTCTGATGTTTTGTAATAGCTAT
LOC_Os01g42820
Os.17617.1.S1_at--773--291NONE
ATAGCTATATGATAACCGCCGTTTT
NONE
Os.17617.1.S1_at--486--351NONE
ATAACCGCCGTTTTACTGAATGACT
NONE
Os.17617.1.S1_at--759--1791NONE
ACCGCCGTTTTACTGAATGACTTCA
NONE
Os.17617.1.S1_at--1068--10411Chr01:24695855..24695879 (25 bp)
TTATGGTTACCATCTGCAGATACGT
LOC_Os01g42820
Os.17617.1.S1_at--144--7891Chr01:24695851..24695875 (25 bp)
GGTTACCATCTGCAGATACGTGCAG
LOC_Os01g42820
Os.17617.1.S1_at--781--7331Chr01:24695832..24695856 (25 bp)
GTGCAGATTTATTAGAAAACCTCCT
LOC_Os01g42820
Os.17617.1.S1_at--105--2371Chr01:24695816..24695840 (25 bp)
AAACCTCCTGTATTTTGATATGACT
LOC_Os01g42820
Os.17617.1.S1_at--608--8771Chr01:24695808..24695832 (25 bp)
TGTATTTTGATATGACTATCTGCTG
LOC_Os01g42820
Target Sequence 
GAACCCTTTGTTATCCATATGTGTCTGATGTTTTGTAATAGCTATATGATAACCGCCGTTTTACTGAATGACTTCAGGAT
TTTTTTTTTTTTATGGTTACCATCTGCAGATACGTGCAGATTTATTAGAAAACCTCCTGTATTTTGATATGACTATCTGC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis