Browse Element(s) Details


Os.17797.1.A1_at

Description gb:AK111117.1
DB_XREF= gi:32996326
TID=Os.17797.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B10, full insert sequence.
FL= gb:AK111117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17797.1.A1_at--663--8791Chr02:27178124..27178148 (25 bp)
TGTTCCGCGCTCTGGTGAACACCAG
LOC_Os02g44880
Os.17797.1.A1_at--842--8611Chr02:27178136..27178160 (25 bp)
TGGTGAACACCAGAGTCTCACTGCT
LOC_Os02g44880
Os.17797.1.A1_at--961--5111Chr02:27178172..27178196 (25 bp)
GCACAAGCTTCTGATGAATTCCCAA
LOC_Os02g44880
Os.17797.1.A1_at--17--5211Chr02:27178187..27178211 (25 bp)
GAATTCCCAACCAAACATCACTAGA
LOC_Os02g44880
Os.17797.1.A1_at--561--9631Chr02:27178204..27178228 (25 bp)
TCACTAGAAACGCAAACTCGATCGA
LOC_Os02g44880
Os.17797.1.A1_at--232--2551Chr02:27178218..27178242 (25 bp)
AACTCGATCGAATTTTGCTACTTTG
LOC_Os02g44880
Os.17797.1.A1_at--1136--4831Chr02:27178234..27178258 (25 bp)
GCTACTTTGAAAGACATCTGTACAT
LOC_Os02g44880
Os.17797.1.A1_at--78--1191Chr02:27178295..27178319 (25 bp)
AGTACTGGCATGTTTAGAGAGCTCC
LOC_Os02g44880
Os.17797.1.A1_at--902--10331Chr02:27178307..27178331 (25 bp)
TTTAGAGAGCTCCATTTCCTTTGTT
LOC_Os02g44880
Os.17797.1.A1_at--669--3811Chr02:27178316..27178340 (25 bp)
CTCCATTTCCTTTGTTTCATCATCA
LOC_Os02g44880
Os.17797.1.A1_at--829--9911Chr02:27178361..27178385 (25 bp)
TACTGCTAGTATTCACATGGGAGCC
LOC_Os02g44880
Target Sequence 
TGTTCCGCGCTCTGGTGAACACCAGAGTCTCACTGCTCAACATTCTGAGCACAAGCTTCTGATGAATTCCCAACCAAACA
TCACTAGAAACGCAAACTCGATCGAATTTTGCTACTTTGAAAGACATCTGTACATAAAAATGGGGCCTTTTTTTAGGCTT
TTGATAATCATAGTACTGGCATGTTTAGAGAGCTCCATTTCCTTTGTTTCATCATCATCATCATCGTACTACTAGCATAC
TGCTAGTATTCACATGGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17797.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis