Browse Element(s) Details


Os.17819.1.S1_at

Description gb:AK068480.1
DB_XREF= gi:32978498
TID=Os.17819.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153O19, full insert sequence.
FL= gb:AK068480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0448011/11Splicing factor 3B subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04500Os.54143.1.S1_at10/112+1998224..2000813S-adenosyl-methyltransferase MraW family protein, expressed
LOC_Os02g04510NANA2+2001938..2005401NmrA-like family protein
LOC_Os02g04520Os.8551.1.S1_s_at11/112+2007232..2009961expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17819.1.S1_at--984--1411Chr02:1983031..1983055 (25 bp)
AGAACTCCTGGTGAAATCCTGAAGA
LOC_Os02g04480
Os.17819.1.S1_at--261--1971Chr02:1983121..1983145 (25 bp)
ACTGTTGGGCTCTCAATGGCTGTAA
LOC_Os02g04480
Os.17819.1.S1_at--992--2411Chr02:1983145..1983169 (25 bp)
AAAACAGAATCTCCTTTCCTGTCCG
LOC_Os02g04480
Os.17819.1.S1_at--576--8711Chr02:1983164..1983188 (25 bp)
TGTCCGAGACCTAGCAGCTTCAGAT
LOC_Os02g04480
Os.17819.1.S1_at--470--1551Chr02:1983179..1983203 (25 bp)
AGCTTCAGATCCGTGGCACATTCAA
LOC_Os02g04480
Os.17819.1.S1_at--354--9591Chr02:1983274..1983298 (25 bp)
TCTTGGTGCTAATGACCTGGTGTCT
LOC_Os02g04480
Os.17819.1.S1_at--893--8311Chr02:1983346..1983370 (25 bp)
GGCTAAGTTGACCTTTCAGATCGAA
LOC_Os02g04480
Os.17819.1.S1_at--586--5231Chr02:1983375..1983399 (25 bp)
GAATAGGTCACATAACTGCATCAGC
LOC_Os02g04480
Os.17819.1.S1_at--708--1111Chr02:1983405..1983429 (25 bp)
AGTGTTCTTCTGTAACTCTTAGAGC
LOC_Os02g04480
Os.17819.1.S1_at--422--831Chr02:1983489..1983513 (25 bp)
ATGGTTGACTCATCTGTAGGCTGCT
LOC_Os02g04480
Os.17819.1.S1_at--324--8331Chr02:1983507..1983531 (25 bp)
GGCTGCTGCTACTTTCATGATGTAC
LOC_Os02g04480
Target Sequence 
AGAACTCCTGGTGAAATCCTGAAGAAGCTGGAGGACATTAGGAACAAAATTATCTGAAAGATCATTGCGCATAGCGAAAG
AACTAGACAAACTGTTGGGCTCTCAATGGCTGTAAAAACAGAATCTCCTTTCCTGTCCGAGACCTAGCAGCTTCAGATCC
GTGGCACATTCAAGAAATAAGAAAACACTAGGGCCAATCGAGTGGAGAGGTGGTAAAGTCCTTAATGGTCTGATTTGTAG
AATTCTTGGTGCTAATGACCTGGTGTCTGGAATTCGTTGTTAATGGTCTGATTTGTATATTTCTTAGTTAACAATGGCTA
AGTTGACCTTTCAGATCGAAGCGAGAATAGGTCACATAACTGCATCAGCATCAGAGTGTTCTTCTGTAACTCTTAGAGCA
TNCTTTAGCCTTTGTGTTAGTATTTGCTGTGATGTAGTTGGACAAGTTCTTTGTTTTGATGGTTGACTCATCTGTAGGCT
GCTGCTACTTTCATGATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis