Browse Element(s) Details


Os.17852.1.S1_at

Description gb:AK069696.1
DB_XREF= gi:32979720
TID=Os.17852.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028P13, full insert sequence.
FL= gb:AK069696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3597010/116-phosphogluconolactonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35950OsAffx.19542.3.S1_x_at4/119+20696949..20701172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17852.1.S1_at--431--6231Chr09:20725025..20725049 (25 bp)
GATGGCCATATTGCATCTCTTTTCC
LOC_Os09g35970
Os.17852.1.S1_at--785--3471Chr09:20725000..20725024 (25 bp)
CAGGCCACCCTCTTGTTAATGAAAA
LOC_Os09g35970
Os.17852.1.S1_at--1036--4391Chr09:20724939..20724963 (25 bp)
GCCACCACCTGAGAGAATTACGTTT
LOC_Os09g35970
Os.17852.1.S1_at--795--9931Chr09:20724921..20724945 (25 bp)
TACGTTTACATTTCCTGTGATCAAC
LOC_Os09g35970
Os.17852.1.S1_at--1087--4631Chr09:20724890..20724914 (25 bp)
GCGTATGTCGCAATGGTGGTCACTG
LOC_Os09g35970
Os.17852.1.S1_at--301--1411Chr09:20724820..20724844 (25 bp)
AGACTTCGTCTGATTTGCTGCCTGT
LOC_Os09g35970
Os.17852.1.S1_at--147--5511Chr09:20724726..20724750 (25 bp)
GAACAAATGAGGTCCATGCCTGGAT
LOC_Os09g35970
Os.17852.1.S1_at--722--7371Chr09:20724585..20724609 (25 bp)
GTGACTGCATAGTTGCATTCCTCTT
LOC_Os09g35970
Os.17852.1.S1_at--536--91Chr09:20724569..20724593 (25 bp)
ATTCCTCTTTTATGCATCACTTGTA
LOC_Os09g35970
Os.17852.1.S1_at--1047--6271Chr09:20724505..20724529 (25 bp)
GATGTATCTGAGACACTCCTGGTTT
LOC_Os09g35970
Os.17852.1.S1_at--288--3331NONE
CACTCCTGGTTTCGGCTTAGTAAAT
NONE
Target Sequence 
GATGGCCATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCTACATCAAGGATTC
TCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTG
GAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCT
GTACTTCAAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCT
GGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATCCCAGCCTGGATACTGNTTAAGCTTTCAATCCAA
AGCTGGGTTGTAATGATCTTCAGTCTAAAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGT
AAGGAAAACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCGGCTTAGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis