Browse Element(s) Details


Os.17876.1.S1_at

Description gb:AK070392.1
DB_XREF= gi:32980416
TID=Os.17876.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049P03, full insert sequence.
FL= gb:AK070392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5945011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59450Os.17876.1.S1_at11/113+33776876..33780585transporter, putative, expressed
LOC_Os03g59460Os.54163.1.S1_at3/113+33781769..33784143bZIP transcription factor family protein
LOC_Os03g59470Os.9591.1.S1_at11/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59470OsAffx.29946.2.S1_at1/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59480OsAffx.25768.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59480OsAffx.25768.1.S1_x_at11/113+33789074..33793670expressed protein
LOC_Os03g59480Os.19198.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17876.1.S1_at--824--3831Chr03:33777436..33777460 (25 bp)
CTGCTGTTGGCATGGTCACTGAGAA
LOC_Os03g59450
Os.17876.1.S1_at--1084--5951Chr03:33777416..33777440 (25 bp)
GAGAAGATCTATGGCTACAACGCAA
LOC_Os03g59450
Os.17876.1.S1_at--342--6291Chr03:33777324..33777348 (25 bp)
GATGATTGTTCCTTTTGGCCTGTGC
LOC_Os03g59450
Os.17876.1.S1_at--622--8691Chr03:33777304..33777328 (25 bp)
TGTGCTTCTTGTTCTACAGCCCACT
LOC_Os03g59450
Os.17876.1.S1_at--1120--2151Chr03:33777289..33777313 (25 bp)
ACAGCCCACTGTACTTTGTGTTCAA
LOC_Os03g59450
Os.17876.1.S1_at--897--3671Chr03:33777276..33777300 (25 bp)
CTTTGTGTTCAAGCGCGATCGAGAA
LOC_Os03g59450
Os.17876.1.S1_at--488--6551Chr03:33777208..33777232 (25 bp)
GATTATCAAATGCTTGCTCGTAAGG
LOC_Os03g59450
Os.17876.1.S1_at--321--6851Chr03:33777081..33777105 (25 bp)
GTTTCCACTTTCTTCAGGCAGATAA
LOC_Os03g59450
Os.17876.1.S1_at--669--10771Chr03:33776986..33777010 (25 bp)
TTGTCTGTCATTTTCTTCTAACTTT
LOC_Os03g59450
Os.17876.1.S1_at--1105--9751Chr03:33776938..33776962 (25 bp)
TAATCTTTCTGCTTACTTGGCTAGG
LOC_Os03g59450
Os.17876.1.S1_at--796--9751Chr03:33776881..33776905 (25 bp)
TAATCATCCGTTCTAGACATTGCTG
LOC_Os03g59450
Target Sequence 
CTGCTGTTGGCATGGTCACTGAGAAGATCTATGGCTACAACGCAAAGACCGTCAATCTGGAAAATGGATCGGTAGCAGGG
GCGTATGCACTCTCGAGGGGGCTATTGACAATGATGATTGTTCCTTTTGGCCTGTGCTTCTTGTTCTACAGCCCACTGTA
CTTTGTGTTCAAGCGCGATCGAGAAAATGTTAGAAGATTGCCTAGTGTCAAGGAGCANGGAGCTAATATGATTATCAAAT
GCTTGCTCGTAAGGGGTGATAGGGGTTTAGTGACCANACAGTTACTACAAGTATCTGATTTTCGGCNCCAACTGAAAATT
TATGTTCAGAGTTGAAATGTTNCAGTTGAGTAATACAGTTTCCACTTTCTTCAGGCAGATAAGAAAACCNCAGAAACNCN
CGATGAATTGTTGTATAATTATTATATCAAGAGTCAAGAGGGAAGCNAAACANTTGTCTGTCATTTTCTTCTAACTTTTT
TGTAGATAAACGGAAAGCTTTTAATCTTTCTGCTTACTTGGCTAGGGAATTTTCTTGTAANCCTGAACTTTACAAAGATA
ATCATCCGTTCTAGACATTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis