Browse Element(s) Details


Os.17881.1.S1_at

Description gb:AK100467.1
DB_XREF= gi:32985676
TID=Os.17881.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092J01, full insert sequence.
FL= gb:AK100467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5494010/11microtubule-associated EB1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030865biological_processcortical cytoskeleton organization and biogenesis
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005815cellular_componentmicrotubule organizing center
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17881.1.S1_at--861--2051Chr04:32467906..32467930 (25 bp)
ACTTCTACTTTTCTAAGCTGCGCGA
LOC_Os04g54940
Os.17881.1.S1_at--227--4971Chr04:32467964..32468141 (25 bp)
GCATCTTCCGATGACCAAGGCTGTA
LOC_Os04g54940
Os.17881.1.S1_at--1133--1451Chr04:32468143..32468167 (25 bp)
AGAAGATACTTTATGCGGCTGATGC
LOC_Os04g54940
Os.17881.1.S1_at--907--1251Chr04:32468171..32468195 (25 bp)
AGATTCGCCATTGCCTGAGGCTAAT
LOC_Os04g54940
Os.17881.1.S1_at--25--7111Chr04:32468210..32468234 (25 bp)
GTCACCAAGCATGTTCCCAGATGAA
LOC_Os04g54940
Os.17881.1.S1_at--305--4931Chr04:32468331..32468355 (25 bp)
GCTTGACATTAGCTACTTGTGGCAA
LOC_Os04g54940
Os.17881.1.S1_at--182--7531Chr04:32468349..32468373 (25 bp)
GTGGCAAGTCCACCGAAGATATCTT
LOC_Os04g54940
Os.17881.1.S1_at--521--2811Chr04:32468364..32468388 (25 bp)
AAGATATCTTCGGTTCTGACTTGAA
LOC_Os04g54940
Os.17881.1.S1_at--680--151Chr04:32468426..32468450 (25 bp)
ATTAGCAATGCTCTTCTCTCGTTTC
LOC_Os04g54940
Os.17881.1.S1_at--566--9511Chr04:32468442..32468466 (25 bp)
TCTCGTTTCTGATCTCCTTGGAGAT
LOC_Os04g54940
Os.17881.1.S1_at--73--191Chr04:32468526..32468550 (25 bp)
ATTTATCTTGATGCTCCACGTTTGA
NONE
Target Sequence 
ACTTCTACTTTTCTAAGCTGCGCGACATTGAGATACTGTGTCAAAGACCANGAGTTGGAGCATCTTCCGATGACCAAGGC
TGTACAGAAGATACTTTATGCGGCTGATGCAAGAGATTCGCCATTGCCTGAGGCTAATGAAATAATCACCCGGTCACCAA
GCATGTTCCCAGATGAAGCCTAGGGAGAAATGGCATCAATACACTCTTAAGCTATATTTAGATAATTTTGTGGCTATNCT
ATTTTGTCGAATCGTTGTAAATGAGTAAATAACGCTTGACATTAGCTACTTGTGGCAAGTCCACCGAAGATATCTTCGGT
TCTGACTTGAATGTCAACTTCCTAGAACTAGTTGTGAACTGAATATGCATTAGCAATGCTCTTCTCTCGTTTCTGATCTC
CTTGGAGATATTTTATGGCATTCGACAGNCTCGTAACTTGCTTTTTTTCTGGAATGGTTATGTTGGATTATTTATCTTGA
TGCTCCACGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis