Browse Element(s) Details


Os.17887.1.S1_at

Description gb:AK102354.1
DB_XREF= gi:32987563
TID=Os.17887.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091G14, full insert sequence.
FL= gb:AK102354.1 gb:AK058825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3691010/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17887.1.S1_at--274--8331NONE
GGCTCGGTGACATTCCATTGTCCAA
NONE
Os.17887.1.S1_at--103--51Chr12:22598789..22598813 (25 bp)
ATTGTCCAACCGCTTCTACAAATGA
LOC_Os12g36910
Os.17887.1.S1_at--564--691Chr12:22598833..22598857 (25 bp)
ATGAGGCAAGCATCTTTCAGAATAG
LOC_Os12g36910
Os.17887.1.S1_at--670--9631Chr12:22598987..22599011 (25 bp)
TCAGTTGCTGAATTCCACCAAGAGC
LOC_Os12g36910
Os.17887.1.S1_at--264--7891Chr12:22599019..22599043 (25 bp)
GGTTACCGCACAATTTGATCCATCT
LOC_Os12g36910
Os.17887.1.S1_at--130--8751Chr12:22599072..22599096 (25 bp)
TGTACTCAACGCACAACAGCTTCAA
LOC_Os12g36910
Os.17887.1.S1_at--891--6111Chr12:22599100..22599124 (25 bp)
GAGTGAATGCCACGAGGCGCTACAA
LOC_Os12g36910
Os.17887.1.S1_at--604--2671Chr12:22599125..22599149 (25 bp)
AAGCTGTCTGAAGACTGATTTCCCT
LOC_Os12g36910
Os.17887.1.S1_at--272--8891Chr12:22599199..22599223 (25 bp)
TGAGTCTCATTTTCTTAATATGCCA
LOC_Os12g36910
Os.17887.1.S1_at--1025--4931Chr12:22599224..22599248 (25 bp)
GCTTGGTATTAGTGATTGCTTCTAT
LOC_Os12g36910
Os.17887.1.S1_at--336--2751Chr12:22599308..22599332 (25 bp)
AAGAACTTTGGCTCTGTGCATGCTA
LOC_Os12g36910
Target Sequence 
GGCTCGGTGACATTCCATTGTCCAACCGCTTCTACAAATGAAATTNNACTGGATCAGTGGTGATGAGGCAAGCATCTTTC
AGAATAGATCATCCAGCTTGTGAAAATGATGCTTCAGTTGCTGAATTCCACCAAGAGCAACAGGTGGTTACCGCACAATT
TGATCCATCTTTTTNTAGCTGTACTCGCTGATGCCCCCATGTACTCAACGCACAACAGCTTCAAAGAGAGTGAATGCCAC
GAGGCGCTACAAAAGCTGTCTGAAGACTGATTTCCCTAAGAACAATGAACATTCATTTTGATGCATATTTAGGTCAAGTA
CTGTTTTGAGTCTCATTTTCTTAATATGCCANGCTTGGTATTAGTGATTGCTTCTATTTAATTTGTAATGTGCTCATATT
CTTGTACTATTTACTGGATCATTATTATTTAGTTACAAGAACTTTGGCTCTGTGCATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis