Browse Element(s) Details


Os.9764.1.S1_at

Description gb:AK110372.1
DB_XREF= gi:32995581
TID=Os.9764.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-B11, full insert sequence.
FL= gb:AK110372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3694011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein
LOC_Os12g36970OsAffx.32061.1.S1_at11/1112+22634026..22634487hypothetical protein
LOC_Os12g36980NANA12+22637435..22638139expressed protein
LOC_Os12g36990Os.47463.1.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36990Os.14491.2.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37000NANA12+22645368..22648676retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9764.1.S1_at--681--2391Chr12:22621940..22621964 (25 bp)
AAACTAACTGCGTTGCGCCTTGTGA
LOC_Os12g36940
Os.9764.1.S1_at--641--10831Chr12:22621959..22621983 (25 bp)
TTGTGATTACCCATGCCAAGGAGCA
LOC_Os12g36940
Os.9764.1.S1_at--758--371Chr12:22622145..22622169 (25 bp)
ATCAACTTCTGCTCACAACAATCTG
LOC_Os12g36940
Os.9764.1.S1_at--385--2152Chr12:22622181..22622205 (25 bp)
ACAGCAGCAGTTTACATTCAGTGGT
LOC_Os12g36940
Os.9764.1.S1_at--927--2011Chr12:22622411..22622435 (25 bp)
ACTACTCAAGGCAATCTTCCAACAC
LOC_Os12g36940
Os.9764.1.S1_at--920--7791Chr12:22622445..22622469 (25 bp)
GGTCCCAATCTCAATACCATGGAAA
LOC_Os12g36940
Os.9764.1.S1_at--931--7131Chr12:22622501..22622525 (25 bp)
GTCATTTCATTTAGTTCACCGATTT
LOC_Os12g36940
Os.9764.1.S1_at--1114--3031Chr12:22622570..22622594 (25 bp)
AATCCTCTCACTTTTTGGTCTCTGA
LOC_Os12g36940
Os.9764.1.S1_at--262--5071Chr12:22622595..22622619 (25 bp)
GCAGCTTAGACTATTGCTCTGTACT
LOC_Os12g36940
Os.9764.1.S1_at--518--4811Chr12:22622610..22622634 (25 bp)
GCTCTGTACTTCACCCATTGATGTG
LOC_Os12g36940
Os.9764.1.S1_at--140--3611Chr12:22622625..22622649 (25 bp)
CATTGATGTGAAACTCTGGCTGAAA
LOC_Os12g36940
Target Sequence 
AAACTAACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAG
GGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCA
GTTTACATTCAGTGGTGATCCAGGATCNATCAGCTCAGGTGAACATGCAGAGCCAGGGGCACTCAAAGCCATCAACTTCT
ACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAAAGCAGAAA
TGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTGTTGAATTGTCACCTGTATTGTAATTTGTA
ATCCTCTCACTTTTTGGTCTCTGAGCAGCTTAGACTATTGCTCTGTACTTCACCCATTGATGTGAAACTCTGGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis