Browse Element(s) Details


OsAffx.32061.1.S1_at

Description tigr:9640.m03585
TID=OsAffx.32061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3697011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein
LOC_Os12g36970OsAffx.32061.1.S1_at11/1112+22634026..22634487hypothetical protein
LOC_Os12g36980NANA12+22637435..22638139expressed protein
LOC_Os12g36990Os.47463.1.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36990Os.14491.2.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37000NANA12+22645368..22648676retrotransposon protein, putative, unclassified
LOC_Os12g37010NANA12+22649292..22655447retrotransposon protein, putative, unclassified
LOC_Os12g37020NANA12+22656590..22659030transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32061.1.S1_at--518--10011Chr12:22634323..22634347 (25 bp)
TAGCACAACTGCTGCGATCCAATAC
LOC_Os12g36970
OsAffx.32061.1.S1_at--869--3151Chr12:22634304..22634328 (25 bp)
CAATACAAGTCATTTTTCCCGGGCT
LOC_Os12g36970
OsAffx.32061.1.S1_at--275--10351Chr12:22634292..22634316 (25 bp)
TTTTTCCCGGGCTTATCACAAGACA
LOC_Os12g36970
OsAffx.32061.1.S1_at--385--5071Chr12:22634266..22634290 (25 bp)
GCAGCTCCGATATGCTATTGCGATT
LOC_Os12g36970
OsAffx.32061.1.S1_at--739--10551Chr12:22634249..22634273 (25 bp)
TTGCGATTGACGGACTCAACCACTA
LOC_Os12g36970
OsAffx.32061.1.S1_at--161--2651Chr12:22634232..22634256 (25 bp)
AACCACTACTCAACTCCGAAGCAAG
LOC_Os12g36970
OsAffx.32061.1.S1_at--344--2751Chr12:22634210..22634234 (25 bp)
AAGACCTTCGAAGTGAAGCCTTCAA
LOC_Os12g36970
OsAffx.32061.1.S1_at--240--9711Chr12:22634172..22634196 (25 bp)
TCAAAGACGCTGACAACGCCTGTTT
LOC_Os12g36970
OsAffx.32061.1.S1_at--40--1831Chr12:22634157..22634181 (25 bp)
ACGCCTGTTTACAACATTCGACTAG
LOC_Os12g36970
OsAffx.32061.1.S1_at--1069--8151Chr12:22634080..22634104 (25 bp)
GGAAAACGGCTCCTACATACGTCAA
LOC_Os12g36970
OsAffx.32061.1.S1_at--796--311Chr12:22634064..22634088 (25 bp)
ATACGTCAACATCACTATCACCAGT
LOC_Os12g36970
Target Sequence 
TAGCACAACTGCTGCGATCCAATACAAGTCATTTTTCCCGGGCTTATCACAAGACAAGCAGCTCCGATATGCTATTGCGA
TTGACGGACTCAACCACTACTCAACTCCGAAGCAAGACCTTCGAAGTGAAGCCTTCAAGAAAAAAATAACATCAAAGACG
CTGACAACGCCTGTTTACAACATTCGACTAGGTTTTTACCCAAAGGAAAAGAAAATAAACCATCAGCACAACGCCACCAA
GAAGGAAAACGGCTCCTACATACGTCAACATCACTATCACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis