Browse Element(s) Details


Os.51798.1.S1_at

Description gb:AK063737.1
DB_XREF= gi:32973755
TID=Os.51798.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F04, full insert sequence.
FL= gb:AK063737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g369301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein
LOC_Os12g36970OsAffx.32061.1.S1_at11/1112+22634026..22634487hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51798.1.S1_at--588--7131Chr06:2071074..2071098 (25 bp)
GTCATCTTACAAGCTGAGTCACTTT
NONE
Os.51798.1.S1_at--468--5872Chr06:2071017..2071041 (25 bp)
GAGCCTATAGAATTTTTCACACCAA
NONE
Os.51798.1.S1_at--1124--10292Chr06:2071003..2071027 (25 bp)
TTTCACACCAAGCTTCACTACTAAA
NONE
Os.51798.1.S1_at--670--3552Chr06:2070924..2070948 (25 bp)
CATCTTATTGCTTTACCTTGATCCC
NONE
Os.51798.1.S1_at--657--7672Chr06:2070846..2070870 (25 bp)
GGGTTGTACTGCACTAATTTCTTTA
NONE
Os.51798.1.S1_at--1024--10772Chr06:2070821..2070845 (25 bp)
TTGTTGTTCCAAGCATAACTGTCTT
NONE
Os.51798.1.S1_at--268--5331Chr06:2070777..2070801 (25 bp)
GAAGTGGCAGACTTGTTGCAGAGAC
NONE
Os.51798.1.S1_at--1062--8293Chr08:14152317..14152341 (25 bp)
GGCTTCTTGTGTACTGCAATCCTGA
NONE
Os.51798.1.S1_at--1113--9853Chr08:14152345..14152369 (25 bp)
TACAGCATTCACTGCAATCACCATT
NONE
Os.51798.1.S1_at--933--3074Chr12:22608741..22608761 (21 bp)
AATCACCATTGCTTATCATCTCCCT
LOC_Os12g36930
Os.51798.1.S1_at--32--8233Chr01:14279027..14279051 (25 bp)
GGCAATTGAGGTGTCTGTTCCTTTT
NONE
Target Sequence 
GTCATCTTACAAGCTGAGTCACTTTCATTTCAATATCTATTTTCATTTAAAATTACTGAGCCTATAGAATTTTTCACACC
AAGCTTCACTACTAAACTTGACATTTGGTATAATAGAACCGCTTCAGTAATTAAAATGTGATGCCTATAACATCTTATTG
CTTTACCTTGATCCCAAAATTGGTTAATTTGGACTAATTTGCCAATTCTTAGAGTGTGAAGACAGGTTGGGTTGTACTGC
ACTAATTTCTTTATTGTTGTTCCAAGCATAACTGTCTTGTTGAAAAGCATAACATGTGAAGTGGCAGACTTGTTGCAGAG
ACATGCATCTGTGTATCCCTCAAAAAAAGACATGCATCTGTGTATGATGAGAAGTAGAGATGGAGCAGGGCTTCTTGTGT
ACTGCAATCCTGAATTTACAGCATTCACTGCAATCACCATTGCTTATCATCTCCCTGGTTCCATGCCCTCTCTTTTTTGT
TACTGTTAAATTCTGATGATCAATTGGCAATTGAGGTGTCTGTTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis