Browse Element(s) Details


Os.27769.1.S1_a_at

Description gb:AK063965.1
DB_XREF= gi:32973983
TID=Os.27769.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A03, full insert sequence.
FL= gb:AK063965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3695011/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein
LOC_Os12g36970OsAffx.32061.1.S1_at11/1112+22634026..22634487hypothetical protein
LOC_Os12g36980NANA12+22637435..22638139expressed protein
LOC_Os12g36990Os.47463.1.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36990Os.14491.2.S1_x_at2/1112+22642428..22643690transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37000NANA12+22645368..22648676retrotransposon protein, putative, unclassified
LOC_Os12g37010NANA12+22649292..22655447retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27769.1.S1_a_at--277--1051Chr12:22623727..22623751 (25 bp)
AGGTGAACCCTTCTTTCGTTGCTAT
LOC_Os12g36950
Os.27769.1.S1_a_at--555--8451Chr12:22623690..22623714 (25 bp)
TGGCCTTCATTTTGTTGGTTGCGAT
LOC_Os12g36950
Os.27769.1.S1_a_at--356--10031Chr12:22623556..22623580 (25 bp)
TAGAGCTACAAGACCACCCATTTTA
LOC_Os12g36950
Os.27769.1.S1_a_at--744--2071Chr12:22623532..22623556 (25 bp)
ACATAGGTGTTCAATTCCATCCAGA
LOC_Os12g36950
Os.27769.1.S1_a_at--48--9731Chr12:22623504..22623528 (25 bp)
TAAGTCAAGGCCTCGGAGACCTTCA
LOC_Os12g36950
Os.27769.1.S1_a_at--1158--3651Chr12:22623320..22623508 (25 bp)
CTTCACCTCCATTTACTGGTCTAAT
LOC_Os12g36950
Os.27769.1.S1_a_at--298--791Chr12:22623276..22623300 (25 bp)
ATGGGAACACCTGCAAATAACTCAA
LOC_Os12g36950
Os.27769.1.S1_a_at--564--7071Chr12:22623230..22623253 (24 bp)
GTAATGCCATCCTTAATCTATCAGA
LOC_Os12g36950
Os.27769.1.S1_a_at--592--8611Chr12:22623091..22623115 (25 bp)
TGGTGTTTTGTTGAGGCATCTGCTT
LOC_Os12g36950
Os.27769.1.S1_a_at--1105--911Chr12:22623078..22623102 (25 bp)
AGGCATCTGCTTGTTGCTGCTGAGA
LOC_Os12g36950
Os.27769.1.S1_a_at--118--6171Chr12:22623052..22623076 (25 bp)
GAGGATTCTAGTCATTTTGGTCACA
LOC_Os12g36950
Target Sequence 
AGGTGAACCCTTCTTTCGTTGCTATGCTTGAAAANGCTGGCCTTCATTTTGTTGGTTGCGATGAAAGTGGAAAGAGGATG
GAGGTTGTAGAGCTACAAGACCACCCATTTTACATAGGTGTTCAATTCCATCCAGAATTTAAGTCAAGGCCTCGGAGACC
TTCACCTCCATTTACTGGTCTAATATTGGCAGCAGCTGAATACATGGGAACACCTGCAAATAACTCAAATGGACATGTTG
GAACATCTGAGTAATGCCATCCTTAATCTATCAGATGGAGGTCATTGATCCCTTTTTGGTGTTTTGTTGAGGCATCTGCT
TGTTGCTGCTGAGATGAGGATTCTAGTCATTTTGGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27769.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis