Browse Element(s) Details


Os.17914.1.S1_at

Description gb:AK066607.1
DB_XREF= gi:32976625
TID=Os.17914.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071P10, full insert sequence.
FL= gb:AK066607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0496010/11Cysteinyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006423biological_processcysteinyl-tRNA aminoacylation
GO:0004817molecular_functioncysteine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17914.1.S1_at--598--251Chr03:2376486..2376510 (25 bp)
ATATCTATCCTTGGTCTGATGCCAC
LOC_Os03g04960
Os.17914.1.S1_at--875--3651Chr03:2376356..2376485 (25 bp)
CTTCTTCCTTGGCAGAGGCACTGAA
LOC_Os03g04960
Os.17914.1.S1_at--982--911Chr03:2376202..2376226 (25 bp)
AGGCAGCAAAGGCATAGCCCTCATG
LOC_Os03g04960
Os.17914.1.S1_at--779--4511Chr03:2376186..2376210 (25 bp)
GCCCTCATGGATGAACCTACTGGTA
LOC_Os03g04960
Os.17914.1.S1_at--280--10111Chr03:2376158..2376182 (25 bp)
TATGGAGACCATGCGAGCCAGAGTC
LOC_Os03g04960
Os.17914.1.S1_at--1106--4411Chr03:2376142..2376166 (25 bp)
GCCAGAGTCTGAATAGTCACATGAT
LOC_Os03g04960
Os.17914.1.S1_at--344--5511NONE
GAAAATTTACCCAAGCACATCTGCT
NONE
Os.17914.1.S1_at--1076--9631Chr03:2375994..2376018 (25 bp)
TCACTGGCCAACTGAAACTTGCGTT
LOC_Os03g04960
Os.17914.1.S1_at--828--2511Chr03:2375979..2376003 (25 bp)
AACTTGCGTTTCTCGTGGTGTAAGA
LOC_Os03g04960
Os.17914.1.S1_at--186--5391Chr03:2375956..2375980 (25 bp)
GAAGCAAAACCCCATATACTGATAT
LOC_Os03g04960
Os.17914.1.S1_at--97--9931Chr03:2375940..2375964 (25 bp)
TACTGATATACTCGAGGACTCCCTT
LOC_Os03g04960
Target Sequence 
ATATCTATCCTTGGTCTGATGCCACCTTCTTCCTTGGCAGAGGCACTGAAGCAACTTAAGGATAAAGCTTTGAAGAGAGC
AGGGTTGACTGAAGAACTGTTGCAGGAGCAAATTGAGCAGAGAACTGCTGCAAGGAAAAACAAGCAGTTTGATGTGTCTG
ACCAAATCAGGAAACAGCTAGGCAGCAAAGGCATAGCCCTCATGGATGAACCTACTGGTACAGTATGGAGACCATGCGAG
CCAGAGTCTGAATAGTCACATGATTGATTTGTGCTTTGGTTAACAGGTGATGGTACAAACTGGAAAATTTACCCAAGCAC
ATCTGCTGAATTGGTGTAAATTGATGCAGATCAACATTTTTTTTTGTAATTTTGTAGGGGTTTAAGTTCACTGGCCAACT
GAAACTTGCGTTTCTCGTGGTGTAAGAAGCAAAACCCCATATACTGATATACTCGAGGACTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis