Browse Element(s) Details


Os.17919.1.S1_at

Description gb:AK070391.1
DB_XREF= gi:32980415
TID=Os.17919.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23485 coproporphyrinogen III oxidase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050L08, full insert sequence.
FL= gb:AK070391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5213011/11Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004109molecular_functioncoproporphyrinogen oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17919.1.S1_at--281--5591Chr04:30745172..30745196 (25 bp)
GAAATGCTTCTCAACTTTGCTACAG
LOC_Os04g52130
Os.17919.1.S1_at--381--7231Chr04:30745602..30745626 (25 bp)
GTCGCTATGTGGAGTTCAACCTTGT
LOC_Os04g52130
Os.17919.1.S1_at--63--271Chr04:30745704..30745728 (25 bp)
ATATGATCGCGGTACCACATTTGGC
LOC_Os04g52130
Os.17919.1.S1_at--714--6011Chr04:30745750..30745774 (25 bp)
GAGAGTATTCTGGTTTCTCTTCCAC
LOC_Os04g52130
Os.17919.1.S1_at--582--3951Chr04:30746038..30746062 (25 bp)
CGGAAACTTCTTGACGCGTGCATAA
LOC_Os04g52130
Os.17919.1.S1_at--583--2931Chr04:30746068..30746092 (25 bp)
AAGGAATGGCTCGATCTCTGAACAG
LOC_Os04g52130
Os.17919.1.S1_at--388--1551Chr04:30746091..30746115 (25 bp)
AGCTTGATTTCGTTCGTTCGTCCAA
LOC_Os04g52130
Os.17919.1.S1_at--341--3051Chr04:30746114..30746138 (25 bp)
AATCGTTTGTTAGCTTTCCTCGCAC
LOC_Os04g52130
Os.17919.1.S1_at--331--9991Chr04:30746143..30746167 (25 bp)
TAGCCTTACGATCTCCAAACATGTG
LOC_Os04g52130
Os.17919.1.S1_at--521--7751Chr04:30746215..30746239 (25 bp)
GGTGTTTTGTTTCATCTGTCGATGC
LOC_Os04g52130
Os.17919.1.S1_at--824--3891Chr04:30746255..30746279 (25 bp)
CTGTGGTATCAGTTTCTCTCTTTTT
LOC_Os04g52130
Target Sequence 
GAAATGCTTCTCAACTTTGCTACAGAATGTGCGGATTCTGTTGTTCCTGCATACATACCAATCATTGAACGCCGGAAGGA
CACTCCATTTACTGAGGAACACAAGGCATGGCAACAACTGAGGAGAGGTCGCTATGTGGAGTTCAACCTTGTATATGATC
GCGGTACCACATTTGGCCTCAAGACTGGGGGGAGGATTGAGAGTATTCTGGTTTCTCTTCCACTGACTGCACGATGGCAG
TATGATCATACACCTGAAGAGGGAACTGAAGAACGGAAACTTCTTGACGCGTGCATAAACCCAAAGGAATGGCTCGATCT
CTGAACAGCTTGATTTCGTTCGTTCGTCCAATCGTTTGTTAGCTTTCCTCGCACTCTGTAGCCTTACGATCTCCAAACAT
GTGTAGTTCTTTTACTTGTAGAATCCTGAATAAGTGTATGNATGCAATNGCNNGGGTGTTTTGTTTCATCTGTCGATGCT
GTTGAGCTTTGTAACTGTGGTATCAGTTTCTCTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis