Browse Element(s) Details


Os.17920.1.S1_at

Description gb:AK101330.1
DB_XREF= gi:32986539
TID=Os.17920.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034G21, full insert sequence.
FL= gb:AK101330.1 gb:AK060153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4544011/11haloacid dehalogenase-like hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17920.1.S1_at--656--5931Chr06:27469454..27469478 (25 bp)
GAGCATCGGAATGCACGCGCTGCTT
LOC_Os06g45440
Os.17920.1.S1_at--1088--4571Chr06:27469438..27469462 (25 bp)
GCGCTGCTTCTGGACCGATTCAAGA
LOC_Os06g45440
Os.17920.1.S1_at--235--2771Chr06:27469417..27469441 (25 bp)
AAGACCGCCGATGCTGAGAGCTGGA
LOC_Os06g45440
Os.17920.1.S1_at--391--6971Chr06:27469360..27469384 (25 bp)
GTAGCTGCTCAGGAGTGGCTCAGCA
LOC_Os06g45440
Os.17920.1.S1_at--438--1431Chr06:27469287..27469311 (25 bp)
AGAAAATTCAGTTCCCCTGTCACTG
LOC_Os06g45440
Os.17920.1.S1_at--646--8731Chr06:27469270..27469294 (25 bp)
TGTCACTGAGCTGAATTCCCTCTTG
LOC_Os06g45440
Os.17920.1.S1_at--961--91Chr06:27469256..27469280 (25 bp)
ATTCCCTCTTGTTTCCTAGTTATGA
LOC_Os06g45440
Os.17920.1.S1_at--138--831Chr06:27469165..27469189 (25 bp)
ATGGTTCTTGGCTGCTGGATTATGT
LOC_Os06g45440
Os.17920.1.S1_at--413--5931Chr06:27469077..27469101 (25 bp)
GAGCATTGTTGTAGTCTCCCATGAA
LOC_Os06g45440
Os.17920.1.S1_at--482--2031Chr06:27469033..27469057 (25 bp)
ACTAGTTTTGTTTGGCATCTTCGCC
LOC_Os06g45440
Os.17920.1.S1_at--729--4971Chr06:27469019..27469043 (25 bp)
GCATCTTCGCCTGTCTGAAGCAATA
LOC_Os06g45440
Target Sequence 
GAGCATCGGAATGCACGCGCTGCTTCTGGACCGATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGCAACTG
TGCTCCCTGACCTGGTAGCTGCTCAGGAGTGGCTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTC
TGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAG
AAATGTGCCATTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTG
TTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATG
AACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis