Browse Element(s) Details


Os.17941.1.S1_s_at

Description gb:AK062977.1
DB_XREF= gi:32972995
TID=Os.17941.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative potassiumproton antiporter-like protein (OJ1015F07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E11, full insert sequence.
FL= gb:AK062977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0359011/11K+ efflux antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0015079molecular_functionpotassium ion transporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17941.1.S1_s_at--849--2651Chr03:1546834..1546858 (25 bp)
AAGCCACAGACATTCATTCATTTGA
LOC_Os03g03590
Os.17941.1.S1_s_at--434--9811Chr03:1546786..1546810 (25 bp)
TAACTCTTTGCACATGCCGTGGAAC
LOC_Os03g03590
Os.17941.1.S1_s_at--537--10671Chr03:1546748..1546772 (25 bp)
TTCCATCATTTCTTTTTGCGGCAAT
LOC_Os03g03590
Os.17941.1.S1_s_at--359--4691Chr03:1546731..1546755 (25 bp)
GCGGCAATACGTCTACACAAGCGAT
LOC_Os03g03590
Os.17941.1.S1_s_at--639--9831Chr03:1546703..1546727 (25 bp)
TAAAGACACAGTTTGACAGGCCGGG
LOC_Os03g03590
Os.17941.1.S1_s_at--14--9551Chr03:1546607..1546631 (25 bp)
TCTTTAGACTGTAAGGCCCCAAGCC
LOC_Os03g03590
Os.17941.1.S1_s_at--935--2651Chr03:1546587..1546611 (25 bp)
AAGCCTTGGTTTTGTATCATCCCTG
LOC_Os03g03590
Os.17941.1.S1_s_at--921--1431Chr03:1546504..1546528 (25 bp)
AGAACCGATATGTGCTGATTCCCCA
LOC_Os03g03590
Os.17941.1.S1_s_at--56--3591Chr03:1546438..1546462 (25 bp)
CATTTGTCCTATGTATGAGCTGCCA
LOC_Os03g03590
Os.17941.1.S1_s_at--275--2071Chr03:1546409..1546433 (25 bp)
ACTTGTTCTGTTCTTGTCGTATGGA
LOC_Os03g03590
Os.17941.1.S1_s_at--244--7091Chr03:1546374..1546398 (25 bp)
GTCACAACATTCTCTTGTCCTAGTA
LOC_Os03g03590
Target Sequence 
AAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGAC
AGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATC
TGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTA
AGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAG
ATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATT
TGTCCTATGTATGAGCTGCCANGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTC
CTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis