Browse Element(s) Details


Os.17958.1.S1_at

Description gb:AK120862.1
DB_XREF= gi:37990485
TID=Os.17958.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024P06, full insert sequence.
FL= gb:AK120862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2393011/11retrotransposon protein, putative, unclassified
LOC_Os09g2415011/11retrotransposon protein, putative, unclassified
LOC_Os09g2389910/11expressed protein
LOC_Os09g240088/11expressed protein
LOC_Os09g239998/11expressed protein
LOC_Os09g239668/11expressed protein
LOC_Os09g239487/11expressed protein
LOC_Os09g240205/11expressed protein
LOC_Os09g241404/11expressed protein
LOC_Os09g239083/11expressed protein
LOC_Os09g241202/11expressed protein
LOC_Os09g239571/11hypothetical protein
LOC_Os09g240291/11hypothetical protein
LOC_Os09g239391/11hypothetical protein
LOC_Os09g241301/11hypothetical protein
LOC_Os09g239801/11hypothetical protein
LOC_Os09g241591/11hypothetical protein
LOC_Os09g241101/11expressed protein
LOC_Os09g240381/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23899Os.17958.1.S1_at10/119+14255378..14256188expressed protein
LOC_Os09g23899OsAffx.17938.1.S1_at1/119+14255378..14256188expressed protein
LOC_Os09g23908Os.17958.1.S1_at3/119+14257598..14258136expressed protein
LOC_Os09g23908OsAffx.17938.1.S1_at1/119+14257598..14258136expressed protein
LOC_Os09g23920NANA9+14262233..14268235retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23930Os.17958.1.S1_at11/119+14270171..14272231retrotransposon protein, putative, unclassified
LOC_Os09g23930Os.10731.2.A1_at3/119+14270171..14272231retrotransposon protein, putative, unclassified
LOC_Os09g23930OsAffx.17938.1.S1_at1/119+14270171..14272231retrotransposon protein, putative, unclassified
LOC_Os09g23939OsAffx.17938.1.S1_at1/119+14273843..14274247hypothetical protein
LOC_Os09g23939Os.17958.1.S1_at1/119+14273843..14274247hypothetical protein
LOC_Os09g23948Os.17958.1.S1_at7/119+14275639..14276297expressed protein
LOC_Os09g23948OsAffx.17938.1.S1_at1/119+14275639..14276297expressed protein
LOC_Os09g23957OsAffx.17938.1.S1_at1/119+14277873..14278277hypothetical protein
LOC_Os09g23957Os.17958.1.S1_at1/119+14277873..14278277hypothetical protein
LOC_Os09g23966Os.17958.1.S1_at8/119+14279639..14280359expressed protein
LOC_Os09g23966OsAffx.17938.1.S1_at1/119+14279639..14280359expressed protein
LOC_Os09g23980Os.40855.4.S1_x_at6/119+14281719..14285769hypothetical protein
LOC_Os09g23980Os.40855.2.S1_x_at6/119+14281719..14285769hypothetical protein
LOC_Os09g23980OsAffx.3900.1.S1_at5/119+14281719..14285769hypothetical protein
LOC_Os09g23980OsAffx.21921.1.S1_at2/119+14281719..14285769hypothetical protein
LOC_Os09g23980Os.17958.1.S1_at1/119+14281719..14285769hypothetical protein
LOC_Os09g23980Os.40360.1.S1_x_at1/119+14281719..14285769hypothetical protein
LOC_Os09g23980OsAffx.17938.1.S1_at1/119+14281719..14285769hypothetical protein
LOC_Os09g23990NANA9+14288382..14290204retrotransposon protein, putative, unclassified
LOC_Os09g23999Os.17958.1.S1_at8/119+14293096..14293806expressed protein
LOC_Os09g24008Os.17958.1.S1_at8/119+14295096..14295831expressed protein
LOC_Os09g24020Os.17958.1.S1_at5/119+14297164..14297821expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17958.1.S1_at--923--15116Chr09:14255788..14255812 (25 bp)
AGCAGCTAAAGCTGTCCTCGATGCC
LOC_Os09g23899
Os.17958.1.S1_at--23--10316Chr09:14255708..14255732 (25 bp)
AGGTAATCGCATCATGAGCCACACG
LOC_Os09g23899
Os.17958.1.S1_at--738--80716Chr09:14255632..14255656 (25 bp)
GGACACGTACCGAGTATCAACGGTT
LOC_Os09g23899
Os.17958.1.S1_at--1106--95716Chr09:14255573..14255597 (25 bp)
TCATTCCATTCTCTCCATTTGTAAG
LOC_Os09g23899
Os.17958.1.S1_at--1067--3516Chr09:14255529..14255553 (25 bp)
ATAATCCGGTGCCATCTAACATTTC
LOC_Os09g23899
Os.17958.1.S1_at--1128--77716Chr09:14255522..14255546 (25 bp)
GGTGCCATCTAACATTTCTAGTTCA
LOC_Os09g23899
Os.17958.1.S1_at--1044--24316Chr09:14255498..14255522 (25 bp)
AAAATGTCGATCCTTGGCACTTGGC
LOC_Os09g23899
Os.17958.1.S1_at--626--5716Chr09:14255489..14255513 (25 bp)
ATCCTTGGCACTTGGCGGAACTTTT
LOC_Os09g23899
Os.17958.1.S1_at--733--55913Chr09:14255398..14255422 (25 bp)
GAAATAACATAAACCGGACCAGCTT
LOC_Os09g23899
Os.17958.1.S1_at--709--3316Chr09:14255390..14255414 (25 bp)
ATAAACCGGACCAGCTTGCGTGCAT
LOC_Os09g23899
Os.17958.1.S1_at--188--49316Chr09:14255377..14255401 (25 bp)
GCTTGCGTGCATCAACGCTTCGATA
NONE
Target Sequence 
AGCAGCTAAAGCTGTCCTCGATGCCGCCCCAGCTNGACAAGTTTAAGTTGATGGATGAATCCTTCAAAGTGGNCTGNTAT
GNAGGTAATCGCATCATGAGCCACACGCCAACCNATCAATAAAGGTCTACTNCTACANCGCCGACATTGGTAGACGANCG
GACACGTACCGAGTATCAACGGTTATTTATGTAATAAATGTCGTGCAANNNNNNNNNCTCATTCCATTCTCTCCATTTGT
AAGAGCACCAGGNGGAAAAAAAATAATCCGGTGCCATCTAACATTTCTAGTTCAAAATGTCGATCCTTGGCACTTGGCGG
AACTTTTNTTTTNCCATGAAATCCTTTGAATGATTCTTTAAACAAAAGTATGGAGTAAAAATATCTTATGTAAGAAATAA
CATAAACCGGACCAGCTTGCGTGCATCAACGCTTCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis