Browse Element(s) Details


Os.1798.1.S1_at

Description gb:AK058909.1
DB_XREF= gi:32968927
TID=Os.1798.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0024G09.19 (P0024G09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F11, full insert sequence.
FL= gb:AK104051.1 gb:AK068113.1 gb:AK058909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0508011/11Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1798.1.S1_at--27--1051Chr01:2381595..2381619 (25 bp)
AGGTGCAGATTTCTCACTGGCAAAT
LOC_Os01g05080
Os.1798.1.S1_at--931--5111Chr01:2381148..2381172 (25 bp)
GCACTTGCCACAGGAAACACGACGT
LOC_Os01g05080
Os.1798.1.S1_at--8--6551Chr01:2380832..2380856 (25 bp)
GATTTTACAGATGTTCCACTGCGAG
LOC_Os01g05080
Os.1798.1.S1_at--209--10691Chr01:2380819..2380843 (25 bp)
TTCCACTGCGAGACGATCAGCGTGA
LOC_Os01g05080
Os.1798.1.S1_at--703--4651Chr01:2380800..2380824 (25 bp)
GCGTGAATACCTCTGCAAAATTGCT
LOC_Os01g05080
Os.1798.1.S1_at--10--7691Chr01:2380651..2380675 (25 bp)
GGGTCAATACAACCACTGGAAACGC
LOC_Os01g05080
Os.1798.1.S1_at--765--8151Chr01:2380634..2380658 (25 bp)
GGAAACGCCACGAAGGAGACTCTTT
LOC_Os01g05080
Os.1798.1.S1_at--521--5311Chr01:2380623..2380647 (25 bp)
GAAGGAGACTCTTTTCTGCAAATGA
LOC_Os01g05080
Os.1798.1.S1_at--177--2031Chr01:2380521..2380545 (25 bp)
ACTACTAGTATATTGCCGCCATGTT
LOC_Os01g05080
Os.1798.1.S1_at--649--10371Chr01:2380491..2380515 (25 bp)
TTTTTTCCCCAAGTGCAGAGAGGAG
LOC_Os01g05080
Os.1798.1.S1_at--1093--8031Chr01:2380470..2380494 (25 bp)
GGAGTAGTACACGATCACATGACAT
LOC_Os01g05080
Target Sequence 
AGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCACTTGCCACAGGAA
ACACGACGTTCAAAGGTTCCAACATATATGGAGCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTC
TGCAAAATTGCTGATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGA
GAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATT
GCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis