Browse Element(s) Details


Os.17992.1.A1_at

Description gb:CB648024
DB_XREF= gi:29643017
DB_XREF=OSJNEb11D14.r
CLONE=OSJNEb11D14
TID=Os.17992.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.17992 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565399.1 (A.thaliana) putative splicing factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0583011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17992.1.A1_at--167--4251Chr03:2903842..2904001 (25 bp)
CCGTGGAGACGGACCCTGATTTTGA
LOC_Os03g05830
Os.17992.1.A1_at--316--2511Chr03:2902259..2902363 (25 bp)
AACATTTATGTCTCCGCAGCAGTAC
LOC_Os03g05830
Os.17992.1.A1_at--947--6991Chr03:2902238..2902262 (25 bp)
GTACTCAACGAAGTTCCCGAGCTAG
LOC_Os03g05830
Os.17992.1.A1_at--541--1571Chr03:2902219..2902243 (25 bp)
AGCTAGCGGACAGCAACTTTCGGTT
LOC_Os03g05830
Os.17992.1.A1_at--667--7911Chr03:2902198..2902222 (25 bp)
GGTTGATCGCTGAAGATTCTTGCTC
LOC_Os03g05830
Os.17992.1.A1_at--562--3631Chr03:2902180..2902204 (25 bp)
CTTGCTCTATTGCTGTGTAACGGTC
LOC_Os03g05830
Os.17992.1.A1_at--963--7391Chr03:2902166..2902190 (25 bp)
GTGTAACGGTCTCCTGTAACATTAT
LOC_Os03g05830
Os.17992.1.A1_at--995--5071Chr03:2902136..2902160 (25 bp)
GCAGCCTTTTGTACTTTATAGCATG
LOC_Os03g05830
Os.17992.1.A1_at--572--1231Chr03:2902096..2902120 (25 bp)
AGTTCGCATACATCACTCGTTTTTG
LOC_Os03g05830
Os.17992.1.A1_at--1108--2671Chr03:2902054..2902078 (25 bp)
AAGCTCTCGAAGTGTACGGCGGGCA
LOC_Os03g05830
Os.17992.1.A1_at--222--7431Chr03:2902013..2902037 (25 bp)
GTGTTTCAATTGATCGTGCCGTGAT
LOC_Os03g05830
Target Sequence 
CCGTGGAGACGGACCCTGATTTTGATTTGGATATCAAAGATGATGTCCAAGAAGAATGCTCCAAGTTTGGCCAAGTAAAA
CACATTTTTGTGGACAAGAATACTTCTGGCTTTGTGTACCTTCGATTTGACAGTATAACAGCTGCCATGAGTGCACAGAA
AGCACTTCATGGGAGGTGGTTTGCGGGAAAGATGATTACGGCAACATTTATGTCTCCGCAGCAGTACTCAACGAAGTTCC
CGAGCTAGCGGACAGCAACTTTCGGTTGATCGCTGAAGATTCTTGCTCTATTGCTGTGTAACGGTCTCCTGTAACATTAT
GTCATGCAGCCTTTTGTACTTTATAGCATGGGTTATTCAACACTAAGTTCGCATACATCACTCGTTTTTGCTTAAGACAT
TATCTATAAGCTCTCGAAGTGTACGGCGGGCAAATATTTTAACTCTTGGTGTTTCAATTGATCGTGCCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17992.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis