Browse Element(s) Details


Os.51215.1.S1_at

Description gb:AK066205.1
DB_XREF= gi:32976223
TID=Os.51215.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059O10, full insert sequence.
FL= gb:AK066205.1 gb:AK062056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0581211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51215.1.S1_at--238--10491Chr03:2891185..2891209 (25 bp)
TTACATACATACCAGAGCACTCCTT
LOC_Os03g05812
Os.51215.1.S1_at--296--8051Chr03:2891210..2891234 (25 bp)
GGAGATATATGCGTCAGCTGCCAAT
LOC_Os03g05812
Os.51215.1.S1_at--961--6671Chr03:2891356..2891380 (25 bp)
GTTGCTCATTTGTATCCGATTTTTG
LOC_Os03g05812
Os.51215.1.S1_at--205--4231Chr03:2891371..2891395 (25 bp)
CCGATTTTTGACGTAGAAGCTCCTA
LOC_Os03g05812
Os.51215.1.S1_at--810--2691Chr03:2891387..2891411 (25 bp)
AAGCTCCTACAGCACGATCTCGAAG
LOC_Os03g05812
Os.51215.1.S1_at--158--5311Chr03:2891436..2891460 (25 bp)
GAAGGATTTTGCTGCCTACAGTGGA
LOC_Os03g05812
Os.51215.1.S1_at--1081--7671Chr03:2891498..2891522 (25 bp)
GGGTTTCCAAATCCATTCATACACG
LOC_Os03g05812
Os.51215.1.S1_at--1088--6671Chr03:2891526..2891550 (25 bp)
GTTGCTGAGCTGCTAGTGTTGTCTA
LOC_Os03g05812
Os.51215.1.S1_at--743--7411Chr03:2891541..2891565 (25 bp)
GTGTTGTCTATACAGGCTCATCGAA
LOC_Os03g05812
Os.51215.1.S1_at--70--7451Chr03:2891627..2891651 (25 bp)
GTGTAAACCTGGACAGTGCCCATCT
LOC_Os03g05812
Os.51215.1.S1_at--1019--6271Chr03:2891717..2891741 (25 bp)
GATGTATCATCTTTGCTCGTGGTTC
LOC_Os03g05812
Target Sequence 
TTACATACATACCAGAGCACTCCTTGGAGATATATGCGTCAGCTGCCAATTCAACGGGAAGTTCATAGAGTCAATATCAG
AGTGTCAAATGGTGCAATTACTGTCTTGGTGAATTGGGGTCTGGGGTCTCAACCTCTGCGCAGAGTGTGAGGTCACTGGA
TCAAGTGTATTGTTGCTCATTTGTATCCGATTTTTGACGTAGAAGCTCCTACAGCACGATCTCGAAGCCAAATAACGCTA
TTTGTACGTGGGAAGGATTTTGCTGCCTACAGTGGAGAAATGGGCACAATGATCTGTCTATAGACTATAAATTGGGTTTC
CAAATCCATTCATACACGGGGGTTGCTGAGCTGCTAGTGTTGTCTATACAGGCTCATCGAAAATCTGTAATGTTTGTGTT
GCATAGTTCAGATTCCATTTTTGTGGTGTTCATTTTTGTTCCGTGTAAACCTGGACAGTGCCCATCTTTTGTTCGACAAT
CGACAGGCAGATGTATCATGCATATGGTGTAGCGAGGAAGGAGAAATTCGCNAGATGTATCATCTTTGCTCGTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis