Browse Element(s) Details


OsAffx.24985.1.S1_at

Description tigr:9631.m00505
TID=OsAffx.24985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kinesin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0582011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24985.1.S1_at--456--5391Chr03:2898351..2898375 (25 bp)
GAAGCAGCTCTCCAGAACCACTGAA
LOC_Os03g05820
OsAffx.24985.1.S1_at--167--10691Chr03:2898380..2898404 (25 bp)
TTGCCAGTCAAATAAGCTCACTCGA
LOC_Os03g05820
OsAffx.24985.1.S1_at--356--6311Chr03:2898589..2898613 (25 bp)
GATGAGACATAGACAGGGCCTTGAA
LOC_Os03g05820
OsAffx.24985.1.S1_at--271--3071Chr03:2898636..2898660 (25 bp)
AATCTTTGGCTGATAATTGCTCTGA
LOC_Os03g05820
OsAffx.24985.1.S1_at--612--7851Chr03:2898787..2898811 (25 bp)
GGTAGTGTGCCTTTTATGTCTAAGT
LOC_Os03g05820
OsAffx.24985.1.S1_at--760--3031Chr03:2898818..2898842 (25 bp)
AATCCAGAGAGTTGCTATCTAGCCA
LOC_Os03g05820
OsAffx.24985.1.S1_at--313--5331Chr03:2898959..2898981 (23 bp)
GAAGTCGGTCTTCCAAATGTCCTGG
LOC_Os03g05820
OsAffx.24985.1.S1_at--579--2291Chr03:2898971..2898995 (25 bp)
AAATGTCCTGGCTCTGTTGAAGTCT
LOC_Os03g05820
OsAffx.24985.1.S1_at--304--1571Chr03:2899034..2899395 (25 bp)
AGCTAATCTTGCTGCTGAAGACGTT
LOC_Os03g05820
OsAffx.24985.1.S1_at--52--6351Chr03:2899429..2899453 (25 bp)
GATGCTCTTCTGTCACTTCTAGAAA
LOC_Os03g05820
OsAffx.24985.1.S1_at--1089--3291Chr03:2899467..2899491 (25 bp)
CACAATTCATCGAGTCACAGCTGGT
LOC_Os03g05820
Target Sequence 
GAAGCAGCTCTCCAGAACCACTGAAGAATTTGCCAGTCAAATAAGCTCACTCGAAGAAAGAATTGCTGATCTCATATCAG
AGAAGGAGTTGGTGTATGAAGAGCTGAAATCTACTCAAGAAAAGATGCAACAGGAGATGAGACATAGACAGGGCCTTGAA
GATGAAATTCTAAGGTTGAAACAATCTTTGGCTGATAATTGCTCTGAAGAGTCTAAAGCATTATGTGGTATGGTTAGATC
AGGATCTGGATTAGGTAGTGTGCCTTTTATGTCTAAGTCAGGAAAATCCAGAGAGTTGCTATCTAGCCAGAGAAGTAACA
TATCAAAGATATTTGAAGAAGTCGGTCTTCCAAATGTCCTGGCTCTGTTGAAGTCTGATGAACTAGAGGTGCAGATCCAT
GCTGTCAAAGTAGTAGCTAATCTTGCTGCTGAAGACGTTAATCAGGAAAAAATCGTTGAAGAAGGAGGACTGGATGCTCT
TCTGTCACTTCTAGAAACATCAGAAAATACCACAATTCATCGAGTCACAGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis