Browse Element(s) Details


Os.48438.1.S1_at

Description gb:AK067387.1
DB_XREF= gi:32977405
TID=Os.48438.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099O15, full insert sequence.
FL= gb:AK067387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0580611/11RNA pseudouridylate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48438.1.S1_at--1068--5211Chr03:2885137..2885161 (25 bp)
GAATAGCAATTGCTCCTTCTCACGT
LOC_Os03g05806
Os.48438.1.S1_at--272--9111Chr03:2885147..2885171 (25 bp)
TGCTCCTTCTCACGTCAAGGTGAAA
LOC_Os03g05806
Os.48438.1.S1_at--30--7771Chr03:2885165..2885189 (25 bp)
GGTGAAAGCTACTCCACACCAATGC
LOC_Os03g05806
Os.48438.1.S1_at--1098--2151Chr03:2885180..2885204 (25 bp)
ACACCAATGCCTGTACGTTAAGTTG
LOC_Os03g05806
Os.48438.1.S1_at--521--10751Chr03:2885243..2885267 (25 bp)
TTGAAGAACACACAAGCTGCTTGGA
LOC_Os03g05806
Os.48438.1.S1_at--855--5371Chr03:2885266..2885290 (25 bp)
GAAGAACATTTTCCAGTGCCCAACA
LOC_Os03g05806
Os.48438.1.S1_at--637--291Chr03:2885433..2885457 (25 bp)
ATAGATGCTCTTACGTGAGGTACAG
LOC_Os03g05806
Os.48438.1.S1_at--836--2631Chr03:2885468..2885492 (25 bp)
AACCATTTTGCTACACGATTCAACA
LOC_Os03g05806
Os.48438.1.S1_at--711--3271Chr03:2885498..2885522 (25 bp)
CAACAAGTAGCAATCCAGGAGGTAT
LOC_Os03g05806
Os.48438.1.S1_at--441--5431Chr03:2885525..2885549 (25 bp)
GAACCAAATTCTCTCGTAATCTGTA
LOC_Os03g05806
Os.48438.1.S1_at--493--1731Chr03:2885566..2885590 (25 bp)
ACCATGTTATGGTTCTGCTACAGCT
LOC_Os03g05806
Target Sequence 
GAATAGCAATTGCTCCTTCTCACGTCAAGGTGAAAGCTACTCCACACCAATGCCTGTACGTTAAGTTGGTGCGGATGGTG
AAGATAGACAAAGACATACTTTTGGCTTGAAGAACACACAAGCTGCTTGGAAGAACATTTTCCAGTGCCCAACANGGCAG
CAGTGTTTGGTGGTGGANGATGGGATATTGNCAGGTTGAGGGTTNGTGATAGAGGCTACACTTTATCAATATATATGGTG
GTGGAGATGGGATATTGTCAGGTTGAGGGTTAGTGATAGAGGCTACACTTTATCAATATAGATGCTCTTACGTGAGGTAC
AGGAGGTATACGAACCATTTTGCTACACGATTCAACACTTATCAACAAGTAGCAATCCAGGAGGTATACGAACCAAATTC
TCTCGTAATCTGTATTTTGAGCAGGAATTAACCATGTTATGGTTCTGCTACAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis