Browse Element(s) Details


Os.17992.2.S1_at

Description gb:CK085109
DB_XREF= gi:38565656
DB_XREF=OsSM01002C07c
CLONE=OsSM01002C07
TID=Os.17992.2
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17992 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565399.1 (A.thaliana) putative splicing factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0583010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17992.2.S1_at--158--1851Chr03:2910068..2910092 (25 bp)
ACGAAGAACGTGACCGCGAACGCTA
LOC_Os03g05830
Os.17992.2.S1_at--465--4831Chr03:2910047..2910071 (25 bp)
GCTACCGCGAGCGAGACTACCGTGA
LOC_Os03g05830
Os.17992.2.S1_at--473--951Chr03:2908367..2908387 (21 bp)
AGGACAGTATTTGCCTACCAGTTAT
LOC_Os03g05830
Os.17992.2.S1_at--788--3711Chr03:2908254..2908274 (21 bp)
CTACCAGTTATCTCTGAAGGCGGAT
LOC_Os03g05830
Os.17992.2.S1_at--735--6971Chr03:2908218..2908242 (25 bp)
GTACGAATTCTTTTCAAGGGCTGGG
LOC_Os03g05830
Os.17992.2.S1_at--197--5311NONE
GAAGGTCCGGGATGTTCGCCTCATC
NONE
Os.17992.2.S1_at--796--731Chr03:2907991..2908015 (25 bp)
ATGTTCGCCTCATCATGGACCGAAA
LOC_Os03g05830
Os.17992.2.S1_at--1007--5531Chr03:2907970..2907994 (25 bp)
GAAACTCGCGCCGTTCTAAAGGAGT
LOC_Os03g05830
Os.17992.2.S1_at--18--7191Chr03:2906693..2906717 (25 bp)
GTCTGTACCAATGGCAATAGCTCTT
LOC_Os03g05830
Os.17992.2.S1_at--1037--3091Chr03:2906678..2906702 (25 bp)
AATAGCTCTTTCTGGCCAGCTGCTT
LOC_Os03g05830
Os.17992.2.S1_at--123--1231Chr03:2906606..2906630 (25 bp)
AGTTCAGTCAAATGCTTCTTCAAGT
LOC_Os03g05830
Target Sequence 
ACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGA
GAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGT
GTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAG
TTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACAG
GTGATGGTTAAGCCATCAGAGGCTGAAAAGAATTTAGTTCAGTCAAATGCTTCTTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17992.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis