Browse Element(s) Details


Os.18022.2.S1_x_at

Description gb:AK106397.1
DB_XREF= gi:32991606
TID=Os.18022.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F09, full insert sequence.
FL= gb:AK106397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0605011/11Type IIB DNA topoisomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06010Os.11885.1.S1_at11/118+3274761..3278148Glycerol 3-phosphate permease, putative, expressed
LOC_Os08g06020Os.22692.1.S1_at11/118+3278752..3283530VAP27, putative, expressed
LOC_Os08g06040Os.11517.1.S1_at10/118+3286787..328954560S ribosomal protein L34, putative, expressed
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g06090Os.55469.1.S1_s_at11/118+3320015..3321237Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0009957biological_processepidermal cell fate specification
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18022.2.S1_x_at--1083--5011Chr08:3295950..3295974 (25 bp)
GCAGGGCTTGCTATACTATGCACTT
LOC_Os08g06050
Os.18022.2.S1_x_at--764--6031Chr08:3295780..3295804 (25 bp)
GAGATGATCTGCAGCTTATACCTCA
LOC_Os08g06050
Os.18022.2.S1_x_at--745--2651Chr08:3295736..3295760 (25 bp)
AAGCCACGTGATCTGCAGATTGCCA
LOC_Os08g06050
Os.18022.2.S1_x_at--540--1551Chr08:3295709..3295733 (25 bp)
AGCTTGCTGTCATCTAAGTTTCTGC
LOC_Os08g06050
Os.18022.2.S1_x_at--973--5151Chr08:3295200..3295224 (25 bp)
GCAAGCGTGCCGAGATCGAAGCTCT
LOC_Os08g06050
Os.18022.2.S1_x_at--1135--5391Chr08:3295183..3295207 (25 bp)
GAAGCTCTCTACTCACATGGGTTTG
LOC_Os08g06050
Os.18022.2.S1_x_at--562--211Chr08:3295111..3295135 (25 bp)
ATTTGACAGTGCATTGCTGCCTGCC
LOC_Os08g06050
Os.18022.2.S1_x_at--317--9191Chr08:3295090..3295114 (25 bp)
TGCCTCATGGTTTCTCTGGTTTTAC
LOC_Os08g06050
Os.18022.2.S1_x_at--1021--10391Chr08:3295053..3295077 (25 bp)
TTTTGAGCTGATTCCATCAGCCCTG
LOC_Os08g06050
Os.18022.2.S1_x_at--643--731Chr08:3294985..3295009 (25 bp)
ATGTTGCTGTTGTTACTGCACGTCC
LOC_Os08g06050
Os.18022.2.S1_x_at--516--7251Chr08:3294964..3294988 (25 bp)
GTCCCCTGCGTGAGTATGCTGTATG
LOC_Os08g06050
Target Sequence 
GCAGGGCTTGCTATACTATGCACTTACAAGTATGGAAGCATTTCAATGGGTTTGGAATCATACAGATATGCTTGCAATGT
AAAATGGCTTGGCCTAAGAGGAGATGATCTGCAGCTTATACCTCAGAGCGCATATCAAGAACTGAAGCCACGTGATCTGC
AGATTGCCAAAAGCTTGCTGTCATCTAAGTTTCTGCAGGACAAGCACAGAGCTGAGCTGACACTGATGTTGGAGACAGGC
AAGCGTGCCGAGATCGAAGCTCTCTACTCACATGGGTTTGATTTCCTGGGGAAATATGTTGCAAGGAAGATTGTACAGGG
TGATTACATTTGACAGTGCATTGCTGCCTGCCTCATGGTTTCTCTGGTTTTACTGAGAACTGAAATTTTGAGCTGATTCC
ATCAGCCCTGGCCCTGTCCAGTTTTCTTCAAAAATGGCTTGTATCTTTGAAGAATGTTGCTGTTGTTACTGCACGTCCCC
TGCGTGAGTATGCTGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18022.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis