Browse Element(s) Details


Os.18042.1.S1_at

Description gb:AK063264.1
DB_XREF= gi:32973282
TID=Os.18042.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A11, full insert sequence.
FL= gb:AK063264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4010011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18042.1.S1_at--579--7451Chr08:25252929..25252953 (25 bp)
GTGTCCTCATGGGAACTGCTTCAAG
LOC_Os08g40100
Os.18042.1.S1_at--988--5951Chr08:25252861..25252885 (25 bp)
GAGAAATACAGGTGCCTTCGCTTCT
LOC_Os08g40100
Os.18042.1.S1_at--1072--1171Chr08:25252820..25252844 (25 bp)
AGATATGGGCTACAGAAGTTGACAA
LOC_Os08g40100
Os.18042.1.S1_at--1086--7991Chr08:25252785..25252809 (25 bp)
GGATGGTACACCAATAGTAGCATTT
LOC_Os08g40100
Os.18042.1.S1_at--525--7411Chr08:25252747..25252771 (25 bp)
GTGATTCAAGCTTGGGTGCTTCATG
LOC_Os08g40100
Os.18042.1.S1_at--232--6951Chr08:25252666..25252690 (25 bp)
GTAGCTACCAGGCAGTGTAGTCTCT
LOC_Os08g40100
Os.18042.1.S1_at--639--1111Chr08:25252653..25252677 (25 bp)
AGTGTAGTCTCTGCAGCCATCTGAT
LOC_Os08g40100
Os.18042.1.S1_at--1037--2311Chr08:25252602..25252626 (25 bp)
AAAGGTGATCTGAGCCTGCCATTTG
LOC_Os08g40100
Os.18042.1.S1_at--1160--4311Chr08:25252584..25252608 (25 bp)
CCATTTGCGTGTCTTGGCATGTAGT
LOC_Os08g40100
Os.18042.1.S1_at--554--231Chr08:25252548..25252572 (25 bp)
ATATTAGATCTAGCTTATGCCACAA
LOC_Os08g40100
Os.18042.1.S1_at--1083--851Chr08:25252523..25252547 (25 bp)
ATGGCTTCATGGCAACTTCTTCAGT
LOC_Os08g40100
Target Sequence 
GTGTCCTCATGGGAACTGCTTCAAGCCNGGATANCCAAGACNGGGCCCTGGAAATCNCNAGTCAGTGGTGAGAAATACAG
GTGCCTTCGCTTCTNCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAAT
AGTAGCATTTTTNAGNCTTAGATGTGATTCAAGCTTGGGTGCTTCATGANATCCTGCAGTGTCNAAAAATGAGGAAAGAT
ANTNCTCTCTTNTNATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCAT
TGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTAT
GCCACAAATGGCTTCATGGCAACTTCTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis