Browse Element(s) Details


Os.18062.1.S1_at

Description gb:AK102065.1
DB_XREF= gi:32987274
TID=Os.18062.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082E21, full insert sequence.
FL= gb:AK102065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3282011/11uridine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32760Os.15166.1.S1_at11/119+19541344..19545176Oleoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os09g32770NANA9+19549496..19551995Auxin Efflux Carrier family protein, expressed
LOC_Os09g32780OsAffx.13097.1.S1_s_at11/119+19555014..19559518Transposable element protein, putative, MuDR
LOC_Os09g32790NANA9+19560082..19560342hypothetical protein
LOC_Os09g32800Os.3736.1.S1_at11/119+19561865..19565427Proteasome subunit beta type 1, putative, expressed
LOC_Os09g32810Os.8665.1.S1_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32810Os.8665.1.S1_s_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32830NANA9+19576951..19580595Purple acid phosphatase, putative
LOC_Os09g32840Os.26943.1.S1_at11/119+19581079..19585800Metallophosphatase, putative, expressed
LOC_Os09g32850NANA9+19586671..19587460hypothetical protein
LOC_Os09g32860NANA9+19589136..19592181F-box domain containing protein, expressed
LOC_Os09g32870Os.27165.1.A1_at11/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32870OsAffx.27735.1.S1_at1/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32880NANA9+19598725..19600526hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18062.1.S1_at--478--1131Chr09:19574609..19574633 (25 bp)
AGTGCGTCTGCAAGCGATTTCCGAG
LOC_Os09g32820
Os.18062.1.S1_at--228--51Chr09:19574641..19574665 (25 bp)
ATTGTAACCTCCGAGATCGACACCG
LOC_Os09g32820
Os.18062.1.S1_at--429--531Chr09:19574656..19574680 (25 bp)
ATCGACACCGGGTTGAGCGAGGAAT
LOC_Os09g32820
Os.18062.1.S1_at--561--4211Chr09:19574715..19574739 (25 bp)
CCGCTACTTCGGCACAGATAATTGA
LOC_Os09g32820
Os.18062.1.S1_at--813--6331Chr09:19574738..19574762 (25 bp)
GATGCTTCCATAGCAATCGCTGGAG
LOC_Os09g32820
Os.18062.1.S1_at--44--9111Chr09:19574767..19574791 (25 bp)
TGCTCCCTGGAGAAGGATCATGCAT
LOC_Os09g32820
Os.18062.1.S1_at--363--7151Chr09:19574833..19574857 (25 bp)
GTCTTAGCTGTTGTATTTGGCTGCA
LOC_Os09g32820
Os.18062.1.S1_at--223--4771Chr09:19574852..19574876 (25 bp)
GCTGCAGTGCAGTACTACATCGTTT
LOC_Os09g32820
Os.18062.1.S1_at--1067--3871Chr09:19574955..19574979 (25 bp)
CTGTAGCTGTTGTTTAGCCTCCAAA
LOC_Os09g32820
Os.18062.1.S1_at--1020--851Chr09:19574990..19575014 (25 bp)
ATGGCGTTAACGGAGGGCAATGCAA
LOC_Os09g32820
Os.18062.1.S1_at--970--4271Chr09:19575117..19575141 (25 bp)
CCTGCAAGCGCATTCTAATAAGACT
LOC_Os09g32820
Target Sequence 
AGTGCGTCTGCAAGCGATTTCCGAGGCTGAAGATTGTAACCTCCGAGATCGACACCGGGTTGAGCGAGGAATACAGGGTA
ATCCCAGGGTTGGGAGAGTACGGTGACCGCTACTTCGGCACAGATAATTGATGCTTCCATAGCAATCGCTGGAGGTGTTG
CTCCCTGGAGAAGGATCATGCATCGGAAGCAACATTTCATACCATGATGAAACTATGTGGATGAGTCTTAGCTGTTGTAT
TTGGCTGCAGTGCAGTACTACATCGTTTGTCAAATTGGTATGCGAGGTANCATGTCAGAGAAATTGGTATGAACCCGGGC
GGCCGAAAGAAAAGTATGGTGTACATCTGTAGCTGTTGTTTAGCCTCCAAAAACCAGAACCATGGCGTTAACGGAGGGCA
ATGCAAATTGTGTGCTAATCGTGATTGTTTGTTTTGAGCCCTTTTTTTTCGNTCAGATGTGTACTGCATGTCTGCATTCC
TTGCTGGGAATGCAAGAAATGAGATCTGCCTGCAAGCGCATTCTAATAAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis