Browse Element(s) Details


Os.18089.1.S1_at

Description gb:AK059591.1
DB_XREF= gi:32969609
TID=Os.18089.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D02, full insert sequence.
FL= gb:AK066618.1 gb:AK059591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2562410/11Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class
LOC_Os08g25624OsAffx.29348.1.S1_s_at11/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624Os.18089.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624OsAffx.29348.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25640NANA8+15467702..15472224retrotransposon protein, putative, unclassified
LOC_Os08g25650OsAffx.17152.1.S1_at11/118+15473808..15475999hypothetical protein
LOC_Os08g25660OsAffx.31753.1.S1_s_at11/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25660OsAffx.31753.4.S1_s_at2/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25670Os.54366.1.S1_at5/118+15487160..15489689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009528cellular_componentplastid inner membrane
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18089.1.S1_at--16--391Chr08:15463044..15463068 (25 bp)
ATCACTCCTACAGTTTTGCAATCTG
LOC_Os08g25624
Os.18089.1.S1_at--325--10751Chr08:15463059..15463207 (25 bp)
TTGCAATCTGCTGGTCTGAATGTAA
LOC_Os08g25624
Os.18089.1.S1_at--1035--2331Chr08:15463208..15463232 (25 bp)
AACAGGTGCTTACAAGGTCTTTACT
LOC_Os08g25624
Os.18089.1.S1_at--114--2911Chr08:15463221..15463245 (25 bp)
AAGGTCTTTACTTGCTGCACTTTGT
LOC_Os08g25624
Os.18089.1.S1_at--1075--9011Chr08:15463236..15463260 (25 bp)
TGCACTTTGTTTCCACGCGTACCAA
LOC_Os08g25624
Os.18089.1.S1_at--276--1751NONE
ACGCGTACCAACAGGTGTCCTACAT
NONE
Os.18089.1.S1_at--728--5391Chr08:15466018..15466042 (25 bp)
GAAGCATGCAGTTGCCATCTTATTG
LOC_Os08g25624
Os.18089.1.S1_at--701--4431Chr08:15466031..15466055 (25 bp)
GCCATCTTATTGTAGCAGTCTTTCC
LOC_Os08g25624
Os.18089.1.S1_at--171--4731Chr08:15466114..15466138 (25 bp)
GCTGAACATGTTCACGTTGAAGCTA
LOC_Os08g25624
Os.18089.1.S1_at--1009--7951Chr08:15466148..15466172 (25 bp)
GGATCATGTATGTGGTCTAACTCTT
LOC_Os08g25624
Os.18089.1.S1_at--369--7031Chr08:15466195..15466219 (25 bp)
GTACATGAGCAGATTTCCGTGCGTG
LOC_Os08g25624
Target Sequence 
ATCACTCCTACAGTTTTGCAATCTGCTGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGTTT
CCACGCGTACCAACAGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGC
GTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCA
CTTGCCGGAGTTTTCCNTGTACTCACAACTGAAGAGACTGAAGCCCAAGCCCAAGGCTGCGTAACTGAAGCATGCAGTTG
CCATCTTATTGTAGCAGTCTTTCCAAGATGAATTGTCGTAGCACACGTTTGGAAATTTATAGTGCATTTAGTGTAGAGGG
AAGCTGAACATGTTCACGTTGAAGCTAAGTGTAGTAGGATCATGTATGTGGTCTAACTCTTACAGTTAAAGCAGGGTTTT
GAAGTACATGAGCAGATTTCCGTGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis