Browse Element(s) Details


Os.18342.1.S1_at

Description gb:AK059372.1
DB_XREF= gi:32969390
TID=Os.18342.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F02, full insert sequence.
FL= gb:AK059372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23080NANA5+13077810..13084543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23090Os.40360.1.S1_x_at1/115+13088096..13090684hypothetical protein
LOC_Os05g23100OsAffx.1436.1.S1_x_at2/115+13091503..13091794hypothetical protein
LOC_Os05g23100OsAffx.2606.1.S1_at2/115+13091503..13091794hypothetical protein
LOC_Os05g23110Os.27691.1.S1_x_at1/115+13093803..13096959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23110Os.27691.2.S1_x_at1/115+13093803..13096959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23120NANA5+13103639..13106200retrotransposon protein, putative, unclassified
LOC_Os05g23130Os.18342.1.S1_at11/115+13109439..13110515expressed protein
LOC_Os05g23140NANA5+13115391..13121855retrotransposon protein, putative, LINE subclass, expressed
LOC_Os05g23150Os.10731.2.A1_at1/115+13125558..13132291retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18342.1.S1_at--51--9511Chr05:13109968..13109992 (25 bp)
TCTCTGACCTGTACGACCTCATCGT
LOC_Os05g23130
Os.18342.1.S1_at--105--4571Chr05:13110032..13110056 (25 bp)
GCGCGCCACTGACATAGAAGTAGCA
LOC_Os05g23130
Os.18342.1.S1_at--157--1291Chr05:13110208..13110232 (25 bp)
AGATCTGATCCGATCTCGGTCAGTT
LOC_Os05g23130
Os.18342.1.S1_at--395--3971Chr05:13110224..13110248 (25 bp)
CGGTCAGTTCGATCAAGAATTGCAA
LOC_Os05g23130
Os.18342.1.S1_at--841--3211Chr05:13110260..13110284 (25 bp)
CAAGAGAGGTCATCCATCCAATCCA
LOC_Os05g23130
Os.18342.1.S1_at--986--3531Chr05:13110287..13110311 (25 bp)
CATCCATGTGTTGGCTCTGTATGAT
LOC_Os05g23130
Os.18342.1.S1_at--354--10871Chr05:13110297..13110321 (25 bp)
TTGGCTCTGTATGATCCTGTCTCTC
LOC_Os05g23130
Os.18342.1.S1_at--112--6751Chr05:13110337..13110361 (25 bp)
GTTCATATTATTGTTGCTCCAGTCG
LOC_Os05g23130
Os.18342.1.S1_at--183--8811Chr05:13110348..13110372 (25 bp)
TGTTGCTCCAGTCGATTGTGTCCAT
LOC_Os05g23130
Os.18342.1.S1_at--563--3451Chr05:13110356..13110380 (25 bp)
CAGTCGATTGTGTCCATGTGTATAT
LOC_Os05g23130
Os.18342.1.S1_at--889--812Chr05:13110379..13110403 (25 bp)
ATGGTGACTTTTAATCATCGCTTAA
LOC_Os05g23130
Target Sequence 
TCTCTGACCTGTACGACCTCATCGTCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATA
GAAGTAGCAANCAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTGAAGAGGAGGAAGAAGA
CGACATGGGCTTCNTTCNTGGTGGGGATCACAANTTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGA
GGAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATCCATCCAATCCAA
TCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTG
TGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis