Browse Element(s) Details


Os.18349.1.A1_s_at

Description gb:CR284520
DB_XREF= gi:44671086
DB_XREF=CR284520
CLONE=y746d07p3
TID=Os.18349.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18349 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177870.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0809011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein
LOC_Os11g08080Os.8874.1.S1_at11/1111+4216741..4225344SWIRM domain containing protein, expressed
LOC_Os11g08090Os.18349.1.A1_s_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08090OsAffx.18741.1.S1_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08100Os.10861.1.S1_at11/1111+4243212..4247703Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g08110NANA11+4249786..42505863-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os11g08120NANA11+4258810..4261206Cyanogenic beta-glucosidase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18349.1.A1_s_at--1028--7591Chr11:4238646..4238670 (25 bp)
GGGCAGAAGCTATACATCTTGTGCA
LOC_Os11g08090
Os.18349.1.A1_s_at--99--2471Chr11:4238679..4238832 (25 bp)
AACACGTTTGGAAAGTCGACACTCG
LOC_Os11g08090
Os.18349.1.A1_s_at--431--9431Chr11:4238830..4238854 (25 bp)
TCGGTCGAGTCACCATCCAGATCGA
LOC_Os11g08090
Os.18349.1.A1_s_at--844--4051Chr11:4238852..4238876 (25 bp)
CGACAACGTTGTCACCGAGGGTGTA
LOC_Os11g08090
Os.18349.1.A1_s_at--669--6891Chr11:4238874..4238898 (25 bp)
GTATACAGTGGTTTCTTCAGCCTTA
LOC_Os11g08090
Os.18349.1.A1_s_at--581--1191Chr11:4239012..4239036 (25 bp)
AGTTTTGGCCTTCATGTAAATCAGC
LOC_Os11g08090
Os.18349.1.A1_s_at--198--2251Chr11:4239029..4239053 (25 bp)
AAATCAGCCCCATAAAACATCCAAA
LOC_Os11g08090
Os.18349.1.A1_s_at--190--11Chr11:4239099..4239123 (25 bp)
ATTCGATTATTTCAAGGTCCTTTCT
LOC_Os11g08090
Os.18349.1.A1_s_at--219--7271Chr11:4239115..4239139 (25 bp)
GTCCTTTCTGGATTGTGTAGCCTTG
LOC_Os11g08090
Os.18349.1.A1_s_at--637--6971Chr11:4239131..4239155 (25 bp)
GTAGCCTTGTAGCTCCAGCAGATTT
LOC_Os11g08090
Os.18349.1.A1_s_at--81--10411Chr11:4239153..4239177 (25 bp)
TTTTGGACCGGCTATTTTTGTACAG
LOC_Os11g08090
Target Sequence 
GGGCAGAAGCTATACATCTTGTGCAAAAGCAAAAACACGTTTGGAAAGTCGACACTCGGTCGAGTCACCATCCAGATCGA
CAACGTTGTCACCGAGGGTGTATACAGTGGTTTCTTCAGCCTTAAGCATGATGGTGGCAAGGATGGCTCGAGAACACTAG
AGATAGAGATTGTATGGTCTAATAGGCCATCCAATGACANTATGTAGCNGTGCTGATTTGNCTNTCNCCAATGTTATAGT
TTTGGCCTTCATGTAAATCAGCCCCATAAAACATCCAAANTCATTCTATGTAGAAAGTTTAGCCAATTCACAAACGTATT
TAACATTCGATTATTTCAAGGTCCTTTCTGGATTGTGTAGCCTTGTAGCTCCAGCAGATTTTGGACCGGCTATTTTTGTA
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18349.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis